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The map label for this gene is yhcM [H]

Identifier: 119775792

GI number: 119775792

Start: 3183605

End: 3184726

Strand: Direct

Name: yhcM [H]

Synonym: Sama_2660

Alternate gene names: 119775792

Gene position: 3183605-3184726 (Clockwise)

Preceding gene: 119775790

Following gene: 119775794

Centisome position: 73.93

GC content: 56.86

Gene sequence:

>1122_bases
ATGCCAGACACTTGCCAACCCTCCGATTTTTCATCGCCCAGCGACCGTTACTACCGTCTCTGTCAAACCTCTCGCCTGCA
CCAAGACCCGGCGCAGCTGGCGGCTCTGGCAGCCTTGGAACTGAGATTTGAGTCCCTTCAACGGCAAGCTGAAACCAAAG
GGCTTTACCTCTGGGGGGATGTGGGCCGGGGCAAGACCTTATTAATGGATCTCTTCCATGCTTCCCTCGGGGATGTCCCC
AATCTGCGGCTGCACTTCCATCACTTTATGGCCCGCATTCACCGGCAATTAAATCAACTCACCGGCATACGGGATCCACT
GAGACATCTGGCGCGGCAGCTGGCAAAGGACTGCCGCGTTCTTTGTTTCGATGAGTTTTTTGTCTCGGACATTGGTGATG
CCATTATTTTGGGTCGGCTGTGCGAAGCCCTGTTTGATGAAGGCGTTATGCTGGTTGCCACCTCCAACACCCCAATCCAC
AGGCTGTATGAAAACGGCCTGCAGCGGGACAGGTTTCTGCCTGCCATCGCACTCTTGCAGCAACAGTTGGAGTCCATTCA
TTTAAACGGCAGTGTGGACCATCGCCTCAAGGCCGACACAAAAGCCCCCGGGATGCCGCGCTGGCAGTGTGGTGGCGAAG
CCGATTTCGACGCCCTCTTCGACTCTGATGCACACAGCAATCTCGAGATACAGGTACTGGGGCGCCCTATTCATGCCAGA
CGCACCGCTTCGGGTATCAGCTGGTTCAGCTTTGAAGACCTGTGTAATGGCCCCCGCTCGCAACTGGATTATATGGCGTT
GGCTGAGCAATTGGAGACATTGGTACTCAGTGACGTGCCAAGGCTTGGCGGCGAACCCCGGGGCTGGATCCGTGCCCGGG
GCACCGAAGATGGCGTTGACGCCACCGCCACTGGTGAGCGCATCTTAAGTTATGCCCCACAGGATGATGCGGCGCGACGC
TTTATTGCCTTGGTGGATGAGTTTTACGATCAGGGCAAGCTGCTGTATTTACATACCCTGGTCCCCCTGGAGGAGCTTTA
TTGCCAGGGGGCACTGGGATTTGAGTTTCGCCGCACCCAAAGCCGGCTGCAGCAAATGCTCCGGGCAGATTGGCCGGGCT
AG

Upstream 100 bases:

>100_bases
GGCCCAGCATAGGTTATCCACACCTGAACGCCAAGGACTGCGACAGGGCGGCAACAGGGCTGATATACTGCCATTCTTTG
TGCTTCCCCGACCTTGCTGT

Downstream 100 bases:

>100_bases
ATATCCTTGCGGCCGGTATTAAGGATTTGCACCGCCGCAGCGGCATTGTCTTTCCAGCGCGCCAGCTCAGCTTCGTTATG
ATATTCCCCGCCCTGCACCA

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MPDTCQPSDFSSPSDRYYRLCQTSRLHQDPAQLAALAALELRFESLQRQAETKGLYLWGDVGRGKTLLMDLFHASLGDVP
NLRLHFHHFMARIHRQLNQLTGIRDPLRHLARQLAKDCRVLCFDEFFVSDIGDAIILGRLCEALFDEGVMLVATSNTPIH
RLYENGLQRDRFLPAIALLQQQLESIHLNGSVDHRLKADTKAPGMPRWQCGGEADFDALFDSDAHSNLEIQVLGRPIHAR
RTASGISWFSFEDLCNGPRSQLDYMALAEQLETLVLSDVPRLGGEPRGWIRARGTEDGVDATATGERILSYAPQDDAARR
FIALVDEFYDQGKLLYLHTLVPLEELYCQGALGFEFRRTQSRLQQMLRADWPG

Sequences:

>Translated_373_residues
MPDTCQPSDFSSPSDRYYRLCQTSRLHQDPAQLAALAALELRFESLQRQAETKGLYLWGDVGRGKTLLMDLFHASLGDVP
NLRLHFHHFMARIHRQLNQLTGIRDPLRHLARQLAKDCRVLCFDEFFVSDIGDAIILGRLCEALFDEGVMLVATSNTPIH
RLYENGLQRDRFLPAIALLQQQLESIHLNGSVDHRLKADTKAPGMPRWQCGGEADFDALFDSDAHSNLEIQVLGRPIHAR
RTASGISWFSFEDLCNGPRSQLDYMALAEQLETLVLSDVPRLGGEPRGWIRARGTEDGVDATATGERILSYAPQDDAARR
FIALVDEFYDQGKLLYLHTLVPLEELYCQGALGFEFRRTQSRLQQMLRADWPG
>Mature_372_residues
PDTCQPSDFSSPSDRYYRLCQTSRLHQDPAQLAALAALELRFESLQRQAETKGLYLWGDVGRGKTLLMDLFHASLGDVPN
LRLHFHHFMARIHRQLNQLTGIRDPLRHLARQLAKDCRVLCFDEFFVSDIGDAIILGRLCEALFDEGVMLVATSNTPIHR
LYENGLQRDRFLPAIALLQQQLESIHLNGSVDHRLKADTKAPGMPRWQCGGEADFDALFDSDAHSNLEIQVLGRPIHARR
TASGISWFSFEDLCNGPRSQLDYMALAEQLETLVLSDVPRLGGEPRGWIRARGTEDGVDATATGERILSYAPQDDAARRF
IALVDEFYDQGKLLYLHTLVPLEELYCQGALGFEFRRTQSRLQQMLRADWPG

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=371, Percent_Identity=30.188679245283, Blast_Score=172, Evalue=6e-43,
Organism=Escherichia coli, GI1789627, Length=324, Percent_Identity=40.7407407407407, Blast_Score=218, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17505769, Length=308, Percent_Identity=30.5194805194805, Blast_Score=166, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6320783, Length=327, Percent_Identity=29.9694189602446, Blast_Score=143, Evalue=5e-35,
Organism=Drosophila melanogaster, GI20129913, Length=321, Percent_Identity=29.9065420560748, Blast_Score=136, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42232; Mature: 42101

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTCQPSDFSSPSDRYYRLCQTSRLHQDPAQLAALAALELRFESLQRQAETKGLYLWGD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
VGRGKTLLMDLFHASLGDVPNLRLHFHHFMARIHRQLNQLTGIRDPLRHLARQLAKDCRV
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHE
LCFDEFFVSDIGDAIILGRLCEALFDEGVMLVATSNTPIHRLYENGLQRDRFLPAIALLQ
EHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
QQLESIHLNGSVDHRLKADTKAPGMPRWQCGGEADFDALFDSDAHSNLEIQVLGRPIHAR
HHHHHEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCHHHH
RTASGISWFSFEDLCNGPRSQLDYMALAEQLETLVLSDVPRLGGEPRGWIRARGTEDGVD
HHHCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCEEECCCCCCCC
ATATGERILSYAPQDDAARRFIALVDEFYDQGKLLYLHTLVPLEELYCQGALGFEFRRTQ
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHCCHHHHHHCCCCCHHHHHHH
SRLQQMLRADWPG
HHHHHHHHCCCCC
>Mature Secondary Structure 
PDTCQPSDFSSPSDRYYRLCQTSRLHQDPAQLAALAALELRFESLQRQAETKGLYLWGD
CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
VGRGKTLLMDLFHASLGDVPNLRLHFHHFMARIHRQLNQLTGIRDPLRHLARQLAKDCRV
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHE
LCFDEFFVSDIGDAIILGRLCEALFDEGVMLVATSNTPIHRLYENGLQRDRFLPAIALLQ
EHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
QQLESIHLNGSVDHRLKADTKAPGMPRWQCGGEADFDALFDSDAHSNLEIQVLGRPIHAR
HHHHHEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCHHHH
RTASGISWFSFEDLCNGPRSQLDYMALAEQLETLVLSDVPRLGGEPRGWIRARGTEDGVD
HHHCCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCEEECCCCCCCC
ATATGERILSYAPQDDAARRFIALVDEFYDQGKLLYLHTLVPLEELYCQGALGFEFRRTQ
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHCCHHHHHHCCCCCHHHHHHH
SRLQQMLRADWPG
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]