| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ybeL [H]
Identifier: 119775713
GI number: 119775713
Start: 3089001
End: 3089501
Strand: Reverse
Name: ybeL [H]
Synonym: Sama_2581
Alternate gene names: 119775713
Gene position: 3089501-3089001 (Counterclockwise)
Preceding gene: 119775728
Following gene: 119775705
Centisome position: 71.75
GC content: 52.5
Gene sequence:
>501_bases ATGACCAGCAGAAGCACGCAATTACTGGCCCTGTATCAGGATCTCATTAAGGATTTGGCCACCCACTTTGAGGCTAACCC CGAGCTGAACGCCAAGAATCTGTTCCGGCTGATGACCTCCGGCGAGGCCTTTGGGCGCCTGAAAGCACAGGCAGATGAAG AAGAGCTGGCGTTGGCACTGGAGTTTCTGAGGCGCGATATAGCCGCCTTTTTACAGGAAAAAAACGAAAGTTCTCTGACT CACAGTCCATCATTTATCGCCATCGAAAACACCCTGTGGCATTGGCTCTCGGAGATAACCGACAGAAGTCAGGTGCAATG GCATGAACTGGCTCAGGATTTTAAACATCACGGCTATTACCAGAGCGGGGAAATTATCAGCCAGGGCCGCATGGTGTGCA CCAGTTGCGGCCATGGAATGGACATCGAATTCCCGTCGGTCGTGCCTGATTGCCCTGAGTGTGATAACGACGAGTTTATT CGCGAGGCTTTGGCGCCTTAG
Upstream 100 bases:
>100_bases GCCTGTTTGTTTGATCACGCGCTTGGTCTGCGCTGCGGGATCTGCATAGAATAAACCAGAAGCGGTTCATTAAAAAGGTT CCCTTGAAGGAGTATTGACG
Downstream 100 bases:
>100_bases CTTTTATCGGCACTTCAGTCTTCGTTGGCGGGGGGCTGATGCCGGTGGATATGGGATCGATTGCCAAATTGATGCTGCCA CCCCTTGTGCCAGGTATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MTSRSTQLLALYQDLIKDLATHFEANPELNAKNLFRLMTSGEAFGRLKAQADEEELALALEFLRRDIAAFLQEKNESSLT HSPSFIAIENTLWHWLSEITDRSQVQWHELAQDFKHHGYYQSGEIISQGRMVCTSCGHGMDIEFPSVVPDCPECDNDEFI REALAP
Sequences:
>Translated_166_residues MTSRSTQLLALYQDLIKDLATHFEANPELNAKNLFRLMTSGEAFGRLKAQADEEELALALEFLRRDIAAFLQEKNESSLT HSPSFIAIENTLWHWLSEITDRSQVQWHELAQDFKHHGYYQSGEIISQGRMVCTSCGHGMDIEFPSVVPDCPECDNDEFI REALAP >Mature_165_residues TSRSTQLLALYQDLIKDLATHFEANPELNAKNLFRLMTSGEAFGRLKAQADEEELALALEFLRRDIAAFLQEKNESSLTH SPSFIAIENTLWHWLSEITDRSQVQWHELAQDFKHHGYYQSGEIISQGRMVCTSCGHGMDIEFPSVVPDCPECDNDEFIR EALAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786863, Length=162, Percent_Identity=32.7160493827161, Blast_Score=90, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009912 [H]
Pfam domain/function: PF07295 DUF1451 [H]
EC number: NA
Molecular weight: Translated: 18916; Mature: 18785
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRSTQLLALYQDLIKDLATHFEANPELNAKNLFRLMTSGEAFGRLKAQADEEELALAL CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHH EFLRRDIAAFLQEKNESSLTHSPSFIAIENTLWHWLSEITDRSQVQWHELAQDFKHHGYY HHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC QSGEIISQGRMVCTSCGHGMDIEFPSVVPDCPECDNDEFIREALAP CCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure TSRSTQLLALYQDLIKDLATHFEANPELNAKNLFRLMTSGEAFGRLKAQADEEELALAL CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHH EFLRRDIAAFLQEKNESSLTHSPSFIAIENTLWHWLSEITDRSQVQWHELAQDFKHHGYY HHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC QSGEIISQGRMVCTSCGHGMDIEFPSVVPDCPECDNDEFIREALAP CCCCHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]