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The map label for this gene is csgA [H]

Identifier: 119775628

GI number: 119775628

Start: 2996903

End: 2997619

Strand: Reverse

Name: csgA [H]

Synonym: Sama_2496

Alternate gene names: 119775628

Gene position: 2997619-2996903 (Counterclockwise)

Preceding gene: 119775629

Following gene: 119775626

Centisome position: 69.61

GC content: 54.11

Gene sequence:

>717_bases
ATGAAGATTCTGATTGTGGGTGGCAGCGGCGGCATTGGCAGCGCCATGGTCAAAGACGCGTTGGCAAGGTTTCAGGATGC
GGAGGTTCACGCCACTTTTTGTACCGATAGTACCCACACCGGCTGTAGCCACTTTTCCGGTGTTAAATGGCACAGGCTCG
ATGTTACCGATGAGGCCGGGATTAAGGCATTAAGCGAAAGCTTTGAGAGTCTGGACTGGCTTATTAACTGCGTGGGCATG
TTGCACTCCGGCAGCAAGGGGCCGGAAAAATCCCTTTCGCAGTTTGATGGGGAGTTTTTCCTGCACAATATGACCTTGAA
TACCTTGCCCACCTTGCTGCTCGCCAAACACTTCAGCGCCAGGTTGAAATCCAGCGTCTCGCCGCGACTGGCGGTGCTTT
CTGCCCGGGTTGGCAGTATCAGTGATAACCGCCTGGGTGGCTGGTACAGCTACCGTGCATCCAAAGCGGCACTCAATATG
CTGATTAAAACCCTGGCTGTGGAGTGGCAACGCAGCCTGAAAGGGGGCGTGGTGTTGGCCCTCCATCCCGGCACTACCAA
GACCCGCTTATCTGAGCCGTTTCAGGCCAATGTGCCTGGGGACAAGCTGTTTTTACCTGAGCGGGTAGCAGCGGATTTAA
TGGATATTATTGCCAGGGCAGAAGTTTGTGACAGTGGCAGTTTCCTCGCTTATGACGGCGCAACAATACCTTGGTAA

Upstream 100 bases:

>100_bases
TGGGGATGATTTTCTCAAGTTGGTACAAAATGCCAGAGTCGCAGCGCACAGCGATTCTCGCTACTGCCGAGCAGTATATT
GTCGATTTGGAGCGGCTGTG

Downstream 100 bases:

>100_bases
AACGAAGGCGCTGCCTTGGTGAACCGCACAGCGCACAGGCTTCAGGGTCAGAGGAAGTCTTCAATAAACCAGGCTGCAAA
TCCGTGTCTGCCGACAACGC

Product: C factor cell-cell signaling protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKILIVGGSGGIGSAMVKDALARFQDAEVHATFCTDSTHTGCSHFSGVKWHRLDVTDEAGIKALSESFESLDWLINCVGM
LHSGSKGPEKSLSQFDGEFFLHNMTLNTLPTLLLAKHFSARLKSSVSPRLAVLSARVGSISDNRLGGWYSYRASKAALNM
LIKTLAVEWQRSLKGGVVLALHPGTTKTRLSEPFQANVPGDKLFLPERVAADLMDIIARAEVCDSGSFLAYDGATIPW

Sequences:

>Translated_238_residues
MKILIVGGSGGIGSAMVKDALARFQDAEVHATFCTDSTHTGCSHFSGVKWHRLDVTDEAGIKALSESFESLDWLINCVGM
LHSGSKGPEKSLSQFDGEFFLHNMTLNTLPTLLLAKHFSARLKSSVSPRLAVLSARVGSISDNRLGGWYSYRASKAALNM
LIKTLAVEWQRSLKGGVVLALHPGTTKTRLSEPFQANVPGDKLFLPERVAADLMDIIARAEVCDSGSFLAYDGATIPW
>Mature_238_residues
MKILIVGGSGGIGSAMVKDALARFQDAEVHATFCTDSTHTGCSHFSGVKWHRLDVTDEAGIKALSESFESLDWLINCVGM
LHSGSKGPEKSLSQFDGEFFLHNMTLNTLPTLLLAKHFSARLKSSVSPRLAVLSARVGSISDNRLGGWYSYRASKAALNM
LIKTLAVEWQRSLKGGVVLALHPGTTKTRLSEPFQANVPGDKLFLPERVAADLMDIIARAEVCDSGSFLAYDGATIPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 25725; Mature: 25725

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIVGGSGGIGSAMVKDALARFQDAEVHATFCTDSTHTGCSHFSGVKWHRLDVTDEAG
CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHCCCCEEEEECCCHHHH
IKALSESFESLDWLINCVGMLHSGSKGPEKSLSQFDGEFFLHNMTLNTLPTLLLAKHFSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
RLKSSVSPRLAVLSARVGSISDNRLGGWYSYRASKAALNMLIKTLAVEWQRSLKGGVVLA
HHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LHPGTTKTRLSEPFQANVPGDKLFLPERVAADLMDIIARAEVCDSGSFLAYDGATIPW
ECCCCCHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure
MKILIVGGSGGIGSAMVKDALARFQDAEVHATFCTDSTHTGCSHFSGVKWHRLDVTDEAG
CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHCCCCEEEEECCCHHHH
IKALSESFESLDWLINCVGMLHSGSKGPEKSLSQFDGEFFLHNMTLNTLPTLLLAKHFSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
RLKSSVSPRLAVLSARVGSISDNRLGGWYSYRASKAALNMLIKTLAVEWQRSLKGGVVLA
HHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LHPGTTKTRLSEPFQANVPGDKLFLPERVAADLMDIIARAEVCDSGSFLAYDGATIPW
ECCCCCHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]