Click here to switch to the map view.

The map label for this gene is 119775629

Identifier: 119775629

GI number: 119775629

Start: 2997619

End: 2999328

Strand: Reverse

Name: 119775629

Synonym: Sama_2497

Alternate gene names: NA

Gene position: 2999328-2997619 (Counterclockwise)

Preceding gene: 119775630

Following gene: 119775628

Centisome position: 69.65

GC content: 53.27

Gene sequence:

>1710_bases
ATGAGCCAGAACCAGATGTCACTCCAAAGTCCCGAGGGCGATTTTCAGTTCCATACACTTCGATTACTCCTTGGCGATCA
GCTCGGCAGCAACCACTCCTGGTTCAGTCAGCACGATGATGGTGTGCTCTATCTTATCGCCGAGCTGAAGCAGGAAAGCC
GCTACGTTACCCACCATGTTCAAAAGGTGTGCGCCTTTTTCGCTGCCATGGCGGATTTTGCCAAAAGCCTTACGGCCTCG
GGCCATCGGGTGCTGCACCTTACTCTGGACGACACCGCCGAATTTGCCAATCTGCCAGCTTTGCTTTGCCATGTTCTACA
AATAACTGGCGCCAGGCGCTTTGAATATCAGCGTCCGGACGAGTATCGGCTGCTTTTGCAACTTGGCACCTTTGCTGTGC
CCGGGGTGCAAGTTGAGATGGTGGACAGCGAGCACTTTTTACTGCCCTTTGATGAGATAAGTATGCTCTTTCCCAAAGGC
AAACATATCCTGATGGAAAGCTTTTATCGGCGGATGCGAAAGCGTTTTGACATTCTGATGGATGGCGCCAGGCCAATGGG
TGGCCAGTGGAACTTCGATGGCAGTAATCGCAATAAGTTAAAAGCGGCCGATATCAAAAACTTGCCGGAACCTTTGCTGT
TTGCAAATGATATCAGTGAGATAGTTCTGCGCCTGCAGCGCCATGGCATCGTCACCATCGGTAATCTTGAGCCGCAAGCG
ACCCAGGCCATCACCAAGGGATGCAAGGCGTCATACGTCAGTGGTGACCTTTTTGATGCTATGCCTGACCTCGAACATGT
TTCGAAAACGCCAATGAACAACCTGCTTTGGCCCATCAATCGAGAGCAGAGTCTGGCGCTGCTGGCCCATTTTTGCCGTC
ACTGCCTGCCGCTTTTTGGCCGCTTTCAGGATGCGATGACGGCAAACCACGCGTCTGCCTGGAGCCTATACCACAGCCGC
TTGTCCTTTTCGATAAACAGCAAATTGCTGCACCCGGGCGAGGTGATAAAGGCGGCCATCAGCGCCTATGAGGCCAGTTG
CATCGATGGAGCAAACGGTGATGTTGATATGGCGCAGGTCGAAGGCTTTGTACGGCAAATTCTTGGCTGGCGGGAATATG
TGCGCGGCGTCTATTGGGCCAATATGCCGGACTATGGAATGCTTAACGCCCTGGGCGCTGAAAACCGGCTGCCGCACTAT
TTCTGGAGTGGCGATACCCGCATGAACTGTATGCGCCACGCCATAGGGCAGTCGCTGGATTATGCCTATGCCCATCATAT
TCAAAGGCTTATGATCACCGGCAATTTTTGCCTGCTCACCGACATCGACCCGAAGCAAGTAGATGACTGGTACCTTGGCA
TCTATGTGGATGCTATCGAGTGGGTCGAAATGCCCAACACCCGGGGCATGGCGCTGTTTGCCGATGGTGGCATTGTGGGC
ACCAAGCCCTATGCCGCCAGCGGCGCCTATATCAACAAGATGAGTGACTACTGCGAGGGCTGCCATTACGACATCAAGGC
GAAAAGCGGCGCGCTTTCGTGCCCCTTTAACAGCCTGTATTGGCGCTTTATAAATAAACATGCCGAGCGCCTTGGGGCCA
ATCATCGGCTGGGGATGATTTTCTCAAGTTGGTACAAAATGCCAGAGTCGCAGCGCACAGCGATTCTCGCTACTGCCGAG
CAGTATATTGTCGATTTGGAGCGGCTGTGA

Upstream 100 bases:

>100_bases
ACCGCCACGGCAACCGCTGCTTGTAACCCTGCATTGCAACCTGAGCTGGCAGCAACGCATTCAAAGCGATTGTAACCGTG
GCTTTTTCCACCCAACTGCA

Downstream 100 bases:

>100_bases
TGAAGATTCTGATTGTGGGTGGCAGCGGCGGCATTGGCAGCGCCATGGTCAAAGACGCGTTGGCAAGGTTTCAGGATGCG
GAGGTTCACGCCACTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Photolyase Family Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photo-Lyase; Cryptochrome/Photolyase-Related; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Deoxyribodipyrimidine Photolyase Related Protein; A Deoxyribodipyrimidine Photolyase-Like Protein; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MSQNQMSLQSPEGDFQFHTLRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHVQKVCAFFAAMADFAKSLTAS
GHRVLHLTLDDTAEFANLPALLCHVLQITGARRFEYQRPDEYRLLLQLGTFAVPGVQVEMVDSEHFLLPFDEISMLFPKG
KHILMESFYRRMRKRFDILMDGARPMGGQWNFDGSNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQA
TQAITKGCKASYVSGDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFGRFQDAMTANHASAWSLYHSR
LSFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQVEGFVRQILGWREYVRGVYWANMPDYGMLNALGAENRLPHY
FWSGDTRMNCMRHAIGQSLDYAYAHHIQRLMITGNFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVG
TKPYAASGAYINKMSDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMIFSSWYKMPESQRTAILATAE
QYIVDLERL

Sequences:

>Translated_569_residues
MSQNQMSLQSPEGDFQFHTLRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHVQKVCAFFAAMADFAKSLTAS
GHRVLHLTLDDTAEFANLPALLCHVLQITGARRFEYQRPDEYRLLLQLGTFAVPGVQVEMVDSEHFLLPFDEISMLFPKG
KHILMESFYRRMRKRFDILMDGARPMGGQWNFDGSNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQA
TQAITKGCKASYVSGDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFGRFQDAMTANHASAWSLYHSR
LSFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQVEGFVRQILGWREYVRGVYWANMPDYGMLNALGAENRLPHY
FWSGDTRMNCMRHAIGQSLDYAYAHHIQRLMITGNFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVG
TKPYAASGAYINKMSDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMIFSSWYKMPESQRTAILATAE
QYIVDLERL
>Mature_568_residues
SQNQMSLQSPEGDFQFHTLRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHVQKVCAFFAAMADFAKSLTASG
HRVLHLTLDDTAEFANLPALLCHVLQITGARRFEYQRPDEYRLLLQLGTFAVPGVQVEMVDSEHFLLPFDEISMLFPKGK
HILMESFYRRMRKRFDILMDGARPMGGQWNFDGSNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQAT
QAITKGCKASYVSGDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFGRFQDAMTANHASAWSLYHSRL
SFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQVEGFVRQILGWREYVRGVYWANMPDYGMLNALGAENRLPHYF
WSGDTRMNCMRHAIGQSLDYAYAHHIQRLMITGNFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVGT
KPYAASGAYINKMSDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMIFSSWYKMPESQRTAILATAEQ
YIVDLERL

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64574; Mature: 64442

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNQMSLQSPEGDFQFHTLRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHV
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH
QKVCAFFAAMADFAKSLTASGHRVLHLTLDDTAEFANLPALLCHVLQITGARRFEYQRPD
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EYRLLLQLGTFAVPGVQVEMVDSEHFLLPFDEISMLFPKGKHILMESFYRRMRKRFDILM
HHHHHHHHCCCCCCCEEEEEECCCCEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
DGARPMGGQWNFDGSNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQA
CCCCCCCCEECCCCCCCCCEEHHHHHCCCCCCEEHHHHHHHHHHHHHCCEEEECCCCHHH
TQAITKGCKASYVSGDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFG
HHHHHHCCCCCCCCCHHHHHCCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RFQDAMTANHASAWSLYHSRLSFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQV
HHHHHHHCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
EGFVRQILGWREYVRGVYWANMPDYGMLNALGAENRLPHYFWSGDTRMNCMRHAIGQSLD
HHHHHHHHHHHHHHCEEEECCCCCCCHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCH
YAYAHHIQRLMITGNFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVG
HHHHHHHHHHEEECCEEEEECCCHHHCCCEEEEEEEEHHHHHCCCCCCCEEEEECCCEEC
TKPYAASGAYINKMSDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMI
CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
FSSWYKMPESQRTAILATAEQYIVDLERL
HHHHHCCCCCCCEEEEEEHHHHHHHHHCC
>Mature Secondary Structure 
SQNQMSLQSPEGDFQFHTLRLLLGDQLGSNHSWFSQHDDGVLYLIAELKQESRYVTHHV
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH
QKVCAFFAAMADFAKSLTASGHRVLHLTLDDTAEFANLPALLCHVLQITGARRFEYQRPD
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
EYRLLLQLGTFAVPGVQVEMVDSEHFLLPFDEISMLFPKGKHILMESFYRRMRKRFDILM
HHHHHHHHCCCCCCCEEEEEECCCCEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
DGARPMGGQWNFDGSNRNKLKAADIKNLPEPLLFANDISEIVLRLQRHGIVTIGNLEPQA
CCCCCCCCEECCCCCCCCCEEHHHHHCCCCCCEEHHHHHHHHHHHHHCCEEEECCCCHHH
TQAITKGCKASYVSGDLFDAMPDLEHVSKTPMNNLLWPINREQSLALLAHFCRHCLPLFG
HHHHHHCCCCCCCCCHHHHHCCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RFQDAMTANHASAWSLYHSRLSFSINSKLLHPGEVIKAAISAYEASCIDGANGDVDMAQV
HHHHHHHCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
EGFVRQILGWREYVRGVYWANMPDYGMLNALGAENRLPHYFWSGDTRMNCMRHAIGQSLD
HHHHHHHHHHHHHHCEEEECCCCCCCHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCCH
YAYAHHIQRLMITGNFCLLTDIDPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGIVG
HHHHHHHHHHEEECCEEEEECCCHHHCCCEEEEEEEEHHHHHCCCCCCCEEEEECCCEEC
TKPYAASGAYINKMSDYCEGCHYDIKAKSGALSCPFNSLYWRFINKHAERLGANHRLGMI
CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
FSSWYKMPESQRTAILATAEQYIVDLERL
HHHHHCCCCCCCEEEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA