| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775562
Identifier: 119775562
GI number: 119775562
Start: 2922458
End: 2923141
Strand: Reverse
Name: 119775562
Synonym: Sama_2428
Alternate gene names: NA
Gene position: 2923141-2922458 (Counterclockwise)
Preceding gene: 119775563
Following gene: 119775561
Centisome position: 67.88
GC content: 54.68
Gene sequence:
>684_bases GTGAACTCTTGCCCGCCTGAAGTGAACAACAACCCACAAACCCCTCTGCCATCCTGGCTTAAACTCGATGGCGTGCCGGG GGATGTGATGGTGCTCTTTGCCCACGGCGCGGGTGCCGATATGGATTCTGACTTTATGGCGGCCATGGCGTCAAGGCTTG CCAGCCAGGGTGTGGCTGTGGTGCGTTTTAACTTTCCTTATATGGAACAGCGCAAGTTGGATGGTAAGCGCCGTCCTCCC AATCGAGCCCCTGCGCTGCTCGAGTGCTTTCGCGAAGCCATTGCCATAGTTGATGCAAACTATAGACCCAAGCAACTGTT TCTCATGGGTAAGTCCATGGGAGGGCGTATGGCTGCCATTCTGGGCGCCGAGTTTGATGTGGCACAAATTGCAGGGATCC TTTGTTTGGGTTACCCCTTTTTACCGCCCAAGGGGAAAGAAGTTCGCCTTGAGCCTTTGGCTAATTGCCAACTGCCACTG TTGATAGTGCAGGGTGAGCGCGACAGCTTTGGCACCAGGGCGCAGGTTGCTGCCTGGAATGTGCCTTCAGCCGTGAAATT CTGCTGGATTGCCGATGGTGATCACAGCCTGACTCCGCGCAAGTCGTCAGGACTTACCGAAGCGGATAACCTGATAGCTG CTGCCTCGGCCTGCCTTGAATTTATGGGAGAAATGAATGAATAG
Upstream 100 bases:
>100_bases GATGCCTATTATCTGGTGTGCCAGCAAAACCATGCCGAGCTTGGCAAAATTGTGGCGTTCCGCGAATGGATGCTGGACAT GTTTGCCGAGGAGTCACGCA
Downstream 100 bases:
>100_bases AGGTTTGTTTTTATTCGCATCTGTGACCGGGTTTCTCGCCGTTGCCCTCGGTGCTTTTGGTGCCCATGGCCTTAAAAATC TGGTGAGTGCCGAGATGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MNSCPPEVNNNPQTPLPSWLKLDGVPGDVMVLFAHGAGADMDSDFMAAMASRLASQGVAVVRFNFPYMEQRKLDGKRRPP NRAPALLECFREAIAIVDANYRPKQLFLMGKSMGGRMAAILGAEFDVAQIAGILCLGYPFLPPKGKEVRLEPLANCQLPL LIVQGERDSFGTRAQVAAWNVPSAVKFCWIADGDHSLTPRKSSGLTEADNLIAAASACLEFMGEMNE
Sequences:
>Translated_227_residues MNSCPPEVNNNPQTPLPSWLKLDGVPGDVMVLFAHGAGADMDSDFMAAMASRLASQGVAVVRFNFPYMEQRKLDGKRRPP NRAPALLECFREAIAIVDANYRPKQLFLMGKSMGGRMAAILGAEFDVAQIAGILCLGYPFLPPKGKEVRLEPLANCQLPL LIVQGERDSFGTRAQVAAWNVPSAVKFCWIADGDHSLTPRKSSGLTEADNLIAAASACLEFMGEMNE >Mature_227_residues MNSCPPEVNNNPQTPLPSWLKLDGVPGDVMVLFAHGAGADMDSDFMAAMASRLASQGVAVVRFNFPYMEQRKLDGKRRPP NRAPALLECFREAIAIVDANYRPKQLFLMGKSMGGRMAAILGAEFDVAQIAGILCLGYPFLPPKGKEVRLEPLANCQLPL LIVQGERDSFGTRAQVAAWNVPSAVKFCWIADGDHSLTPRKSSGLTEADNLIAAASACLEFMGEMNE
Specific function: Unknown
COG id: COG3571
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24598; Mature: 24598
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSCPPEVNNNPQTPLPSWLKLDGVPGDVMVLFAHGAGADMDSDFMAAMASRLASQGVAV CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEE VRFNFPYMEQRKLDGKRRPPNRAPALLECFREAIAIVDANYRPKQLFLMGKSMGGRMAAI EEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE LGAEFDVAQIAGILCLGYPFLPPKGKEVRLEPLANCQLPLLIVQGERDSFGTRAQVAAWN CCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECC VPSAVKFCWIADGDHSLTPRKSSGLTEADNLIAAASACLEFMGEMNE CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNSCPPEVNNNPQTPLPSWLKLDGVPGDVMVLFAHGAGADMDSDFMAAMASRLASQGVAV CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEE VRFNFPYMEQRKLDGKRRPPNRAPALLECFREAIAIVDANYRPKQLFLMGKSMGGRMAAI EEECCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE LGAEFDVAQIAGILCLGYPFLPPKGKEVRLEPLANCQLPLLIVQGERDSFGTRAQVAAWN CCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCEEEEEECC VPSAVKFCWIADGDHSLTPRKSSGLTEADNLIAAASACLEFMGEMNE CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA