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The map label for this gene is ygdD [H]

Identifier: 119775561

GI number: 119775561

Start: 2922079

End: 2922465

Strand: Reverse

Name: ygdD [H]

Synonym: Sama_2427

Alternate gene names: 119775561

Gene position: 2922465-2922079 (Counterclockwise)

Preceding gene: 119775562

Following gene: 119775560

Centisome position: 67.87

GC content: 54.52

Gene sequence:

>387_bases
ATGAATAGAGGTTTGTTTTTATTCGCATCTGTGACCGGGTTTCTCGCCGTTGCCCTCGGTGCTTTTGGTGCCCATGGCCT
TAAAAATCTGGTGAGTGCCGAGATGGTCTCGGTGTTTAAATTGGCGGTTGAATACCAGTTTTATCACACCTTTGCCCTGC
TTGCTGTCGCGCTTGCCTGGCCCTTTATCGCATCTCGTTTACTGACCTGGGCGGCTGGATTTTTTATTGTGGGTATGGCG
CTCTTCTCCGGCTCTTTGTACGCACTGGTTATGACAGGGGCCAAATGGTGGGGGCCTGTTACCCCGCTGGGCGGTACCTG
TTTGCTTCTGGGATGGCTGCTGTTGGGGGCGGCGGTATGGCGCAGCCGGGTCGTTGACGGCAAATAG

Upstream 100 bases:

>100_bases
GGTGATCACAGCCTGACTCCGCGCAAGTCGTCAGGACTTACCGAAGCGGATAACCTGATAGCTGCTGCCTCGGCCTGCCT
TGAATTTATGGGAGAAATGA

Downstream 100 bases:

>100_bases
CCAAGAGATGGCCGCGCTGTGATATACTCGGCGCCAATTTCTGATTTTGCGGCCTTTGGGCCGCTTTATGTTAGCGCCAA
CGAAGAATCGCAATGAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MNRGLFLFASVTGFLAVALGAFGAHGLKNLVSAEMVSVFKLAVEYQFYHTFALLAVALAWPFIASRLLTWAAGFFIVGMA
LFSGSLYALVMTGAKWWGPVTPLGGTCLLLGWLLLGAAVWRSRVVDGK

Sequences:

>Translated_128_residues
MNRGLFLFASVTGFLAVALGAFGAHGLKNLVSAEMVSVFKLAVEYQFYHTFALLAVALAWPFIASRLLTWAAGFFIVGMA
LFSGSLYALVMTGAKWWGPVTPLGGTCLLLGWLLLGAAVWRSRVVDGK
>Mature_128_residues
MNRGLFLFASVTGFLAVALGAFGAHGLKNLVSAEMVSVFKLAVEYQFYHTFALLAVALAWPFIASRLLTWAAGFFIVGMA
LFSGSLYALVMTGAKWWGPVTPLGGTCLLLGWLLLGAAVWRSRVVDGK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=114, Percent_Identity=41.2280701754386, Blast_Score=83, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13732; Mature: 13732

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRGLFLFASVTGFLAVALGAFGAHGLKNLVSAEMVSVFKLAVEYQFYHTFALLAVALAW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFIASRLLTWAAGFFIVGMALFSGSLYALVMTGAKWWGPVTPLGGTCLLLGWLLLGAAVW
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHH
RSRVVDGK
HHHCCCCC
>Mature Secondary Structure
MNRGLFLFASVTGFLAVALGAFGAHGLKNLVSAEMVSVFKLAVEYQFYHTFALLAVALAW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFIASRLLTWAAGFFIVGMALFSGSLYALVMTGAKWWGPVTPLGGTCLLLGWLLLGAAVW
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHH
RSRVVDGK
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]