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The map label for this gene is ytbD [H]

Identifier: 119775524

GI number: 119775524

Start: 2869829

End: 2871022

Strand: Direct

Name: ytbD [H]

Synonym: Sama_2390

Alternate gene names: 119775524

Gene position: 2869829-2871022 (Clockwise)

Preceding gene: 119775522

Following gene: 119775528

Centisome position: 66.65

GC content: 55.86

Gene sequence:

>1194_bases
ATGCCCTTAGCTCTATTTGCATTGGCACTCAGTGCCTTTGCCATCGGCACCACTGAATTTGTTATCGTTGGGCTTATCCC
AACCATGGCCGCCGACCTCAATATTTCATTACCATCGGCCGGACTTCTGGTCAGCCTCTACGCTCTTGGCGTGGCTGTCG
GTGCGCCGGTGCTTACCGCACTCACCGGCAGCTGGAATCGCAAGCGCGTCCTGCTTGCGGTTATGGCGCTGTTTGTTCTG
GGCAATCTGCTGGCGTGGCAAGCCCCGGGCTATGCCACTCTGGTGGTTGCCCGCGTGCTCACTGGCCTGGCCCACGGGGT
GTTTTTCTCCATTGGTTCTACCATTGCTACTGGCCTCGTTGCCAAAGAGAAAGCCGCCAGTGCCATCGCCATTATGTTCA
CCGGTTTAACGGTTGCCCTGGTCACGGGTGTTCCTCTTGGTACCTACATAGGGCAATCCTTTGGCTGGCAGGCCACCTTC
TTAATCGTGGCGATGCTCGGATTACTTGCCCTGATTGGCAGCGCTTTTTTGGTACCAGGCAATCTTAAGCAGCCACCTGC
CACCAAGCTCTCGGCGCAGCTTAAGGTATTGACTCAACCCCGCCTGCTGCTGGTGTACGGGATTACTGCGCTGGGATATG
GCGGCACCTTTACCGCTTTTACTTTCCTTGCTCCCATCTTGCAGACCGAAGCTGGATTCAGCGCCGGTGCCATAGGTCTC
ATCATGCTGGTGTATGGTGTGTCCGTGGCGGTCGGCAACATCTGGGGCGGTAAAATGGCCGATAAGATGGGGCCGATAAA
AGCCCTGACTGTAATTTTTTCAGGTTTGGCTGCCATCTTGCTGGTGTTTAACTTTACCGCTTATGACCCGGTACTGGCGG
TGGCTACCATTCTGGTGTGGGGTGCCTTTGCCTTTGGCAATGTGCCCGGCTTGCAGGTTTACGTGGTGACACTGGCTGAA
AAGTATGCCCCGGATGCCGTTGATGTAGCCTCTGGACTCAACATTGCAGCCTTTAACGTTGGTATTGCATTGGGTTCATG
GGGCGGCGGCGAAATTGTGGCGCGCTCAGGTCTGATGCACACGCCATGGGTTGGTGCTGCGGTAGTACTGCTGGCGCTTG
GACTAACCCGCTTGAGTGGCAAACTCGATAGTCGAGACGAGTCCCCCAAACACCACTGCACACAGGTAGCATGA

Upstream 100 bases:

>100_bases
CTAAAGTCCAACGCATAATCCCGCCATCCAAACAGAACATGCACCCGTCTGGTTTGAGCCGGGTGCATGTTTTACCCAAC
CACCCAAAGTGAGTATCACT

Downstream 100 bases:

>100_bases
TATGAACAAAGCCGCAGTCACAGACTGAACAAATAGAAAGGGAGCTATGCTCCCTTTTTACATTGGGGCAGTAACCCCTT
TGCTCAGACTATCTCAAAGG

Product: putative transmembrane efflux transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MPLALFALALSAFAIGTTEFVIVGLIPTMAADLNISLPSAGLLVSLYALGVAVGAPVLTALTGSWNRKRVLLAVMALFVL
GNLLAWQAPGYATLVVARVLTGLAHGVFFSIGSTIATGLVAKEKAASAIAIMFTGLTVALVTGVPLGTYIGQSFGWQATF
LIVAMLGLLALIGSAFLVPGNLKQPPATKLSAQLKVLTQPRLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGL
IMLVYGVSVAVGNIWGGKMADKMGPIKALTVIFSGLAAILLVFNFTAYDPVLAVATILVWGAFAFGNVPGLQVYVVTLAE
KYAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARSGLMHTPWVGAAVVLLALGLTRLSGKLDSRDESPKHHCTQVA

Sequences:

>Translated_397_residues
MPLALFALALSAFAIGTTEFVIVGLIPTMAADLNISLPSAGLLVSLYALGVAVGAPVLTALTGSWNRKRVLLAVMALFVL
GNLLAWQAPGYATLVVARVLTGLAHGVFFSIGSTIATGLVAKEKAASAIAIMFTGLTVALVTGVPLGTYIGQSFGWQATF
LIVAMLGLLALIGSAFLVPGNLKQPPATKLSAQLKVLTQPRLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGL
IMLVYGVSVAVGNIWGGKMADKMGPIKALTVIFSGLAAILLVFNFTAYDPVLAVATILVWGAFAFGNVPGLQVYVVTLAE
KYAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARSGLMHTPWVGAAVVLLALGLTRLSGKLDSRDESPKHHCTQVA
>Mature_396_residues
PLALFALALSAFAIGTTEFVIVGLIPTMAADLNISLPSAGLLVSLYALGVAVGAPVLTALTGSWNRKRVLLAVMALFVLG
NLLAWQAPGYATLVVARVLTGLAHGVFFSIGSTIATGLVAKEKAASAIAIMFTGLTVALVTGVPLGTYIGQSFGWQATFL
IVAMLGLLALIGSAFLVPGNLKQPPATKLSAQLKVLTQPRLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGLI
MLVYGVSVAVGNIWGGKMADKMGPIKALTVIFSGLAAILLVFNFTAYDPVLAVATILVWGAFAFGNVPGLQVYVVTLAEK
YAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARSGLMHTPWVGAAVVLLALGLTRLSGKLDSRDESPKHHCTQVA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=394, Percent_Identity=39.3401015228426, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1786595, Length=355, Percent_Identity=31.830985915493, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1787808, Length=368, Percent_Identity=29.8913043478261, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693198, Length=362, Percent_Identity=25.1381215469613, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40740; Mature: 40609

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLALFALALSAFAIGTTEFVIVGLIPTMAADLNISLPSAGLLVSLYALGVAVGAPVLTA
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
LTGSWNRKRVLLAVMALFVLGNLLAWQAPGYATLVVARVLTGLAHGVFFSIGSTIATGLV
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEKAASAIAIMFTGLTVALVTGVPLGTYIGQSFGWQATFLIVAMLGLLALIGSAFLVPG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCC
NLKQPPATKLSAQLKVLTQPRLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGL
CCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
IMLVYGVSVAVGNIWGGKMADKMGPIKALTVIFSGLAAILLVFNFTAYDPVLAVATILVW
HHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GAFAFGNVPGLQVYVVTLAEKYAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARSGLMH
HHHHHCCCCCCEEEEEEHHHHHCCCHHHHHCCCEEEEEEEEEEEECCCCCHHHCCCCCCC
TPWVGAAVVLLALGLTRLSGKLDSRDESPKHHCTQVA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
PLALFALALSAFAIGTTEFVIVGLIPTMAADLNISLPSAGLLVSLYALGVAVGAPVLTA
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
LTGSWNRKRVLLAVMALFVLGNLLAWQAPGYATLVVARVLTGLAHGVFFSIGSTIATGLV
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEKAASAIAIMFTGLTVALVTGVPLGTYIGQSFGWQATFLIVAMLGLLALIGSAFLVPG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCC
NLKQPPATKLSAQLKVLTQPRLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGL
CCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
IMLVYGVSVAVGNIWGGKMADKMGPIKALTVIFSGLAAILLVFNFTAYDPVLAVATILVW
HHHHHHHHHHHCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GAFAFGNVPGLQVYVVTLAEKYAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARSGLMH
HHHHHCCCCCCEEEEEEHHHHHCCCHHHHHCCCEEEEEEEEEEEECCCCCHHHCCCCCCC
TPWVGAAVVLLALGLTRLSGKLDSRDESPKHHCTQVA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]