| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775404
Identifier: 119775404
GI number: 119775404
Start: 2735660
End: 2737516
Strand: Direct
Name: 119775404
Synonym: Sama_2269
Alternate gene names: NA
Gene position: 2735660-2737516 (Clockwise)
Preceding gene: 119775401
Following gene: 119775405
Centisome position: 63.53
GC content: 53.74
Gene sequence:
>1857_bases ATGACTCAAATCAGCGCACTCACATCAATACTGACCAGCAATTCAAGCACAGGAGCTGAAACAAGTTTGCTGCCAGTCAG GCTGAGTCAAACACAGGGCGCTGCGATACTCACCATCGCAAATACCAGCTATCTCATAAAGCCGCCGGTTGACCTGTCCC AATTTTCGGCACAAACACTGATGTTGAAAGTGCCCCAGCAGGCAGCCGTTTCGTCTCTCACGGCCGCGACTCTGGTCGCC CTCGCCCCCAGCATCCAGCTCCCCTTCCCTGGCGCCTTGGCAGAACAGATTCGCCGCCTTGGCATTGATACAGAGAAGCT GCTGTCGCTGACCAAGAGCCCTGGTGGTTACCTGCTGGGAGACGCCAGCTATACCAATGGGCAGTTGCGCTTTAAAGGCG GCTTTCAGTTGCCCTTACCCTCGCTGAAACCGCCACAGCCTGAGCTGATGAGGGCCAGAATCGTCTTAAAGGAAGGTGAG CTTAAACTCATGGTCGACCCTATTAAGGCCGAAGCAAAAGTCAGCCTGGAGGCCATCGGTGGCAAAACAGCTCCTGTGAC GAAAAACCTATTAACGGCCCCTGTGACACAAGAAGCCATTCTGAGCTCGCTGCAAAGAAAACTGACGGGCCAAACTGTCA ATCACATCAACACCAGCAGCACAGAAAACACCAGCAAACCTGCGATGCCAGCACCCAAGCCATCGGATGGGAGTGGCCAA AGCAATATCAAAGCAGAAACTCCGGTAACAGACAGTAAATCCAGCGCGCCAAACACACTCGCCGCCCCTGATAAGCCCGA AAAGGCACCCGCCCCTTCTGTTGCTGAGGCCAAAAAGCAACTTACAGAACCTGTTAGCAGCAAAATGGCAGATAGTGCGG ATAAGGCTCAGGCCGATAAGCAGTTACAGGTAAAAGCGTCTGACTTTCAGTCAGGTAAGACAGTCGGCAGCGAAACTGCT CTTCTCCAAAAGAGCACTGCAGACATGAACGGTGAGCCAGAGCGTAAAGCGCAAGTAGGCACTCACCTTGCTGCAGAGAA AAGACTCTTAATGAACCTCGATAAAAGCGGGGCGCTTCCCCCGCTAAAATTAGCAGACATTGAAGAAACGTCTCCCATCA CAACGCCAGACGCGGCTCGTCGTTTACTTGCCCTGTTGAAACCACTGCCAGTGAACATGCTACTGGGCGGCATGGCGATA CAGGAGACCATCTCTGCTTCAAACGGAAACCAGCTTTTGGCCCGCCACGGAACCATTGCTGATGCGGTATTGCACCAACC CCTGGCGATGGTGTTTCAATTGCTGCTTGGAGGCGCCGCCCTTAAACGCGAGCACTCACTTACCCCACTGATGACGCAGT GGCTCAATGTGGCGGCTAAGGGCACCGGGATCAGCCTGGCAGACGCCATAACCCTCGCCGATGACGATACCCTTGATTCG TTAATGCAACTTGCGCAGGTAAGGCGTGAATATGCAGAAGCCAGTAATCCAAGGGACGGTTGGTTCTTTTGCCTGCCTTA CCTTATGGGTGAAAAGCAGCGGCAGCTGGAAGGCCATTGGCAACGTCAAGCTAACCAGGAGCAGGATGACCACCAAGAAA GCTGGCGTCTCAAGCTTAAGTTTTCTTTGAATGATGCAGATCTGCTGGTTGACGCCAAACGCACGCCCAGTGCGCTGGAT GTGCAGCTTGTCTGCAGTCAGGAGAAACTCAATAACCGGGTAGGAAATTATCTGCCTGTGCTGCAGGCACACCTGCAGTC ATTGGGCTTTGGCACCACAATACTTTCCTGTCGCCACGATACCGTGCCCGGCAGTCTGCTGCCCGGCAAATCCTTTGCCG TGGATTTAAGGGCCTGA
Upstream 100 bases:
>100_bases AGACGCTATGAAGTGATTTATTCAGTATCCAGGCTCTTTACATAGCACAGCACCGCAAATTCAGGACCGCGACGAGACTC ACTTGCACCCGAGCTAAAAC
Downstream 100 bases:
>100_bases GCATGAATAAACAAGACAAGATAGCGGTAGCCTTAAGTTACGACGGTAACGGGGCGCCCAAAGTCACAGCCAAAGGCGAG GCCTTACTTGCAGAGGAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 618; Mature: 617
Protein sequence:
>618_residues MTQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTLMLKVPQQAAVSSLTAATLVA LAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLGDASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGE LKLMVDPIKAEAKVSLEAIGGKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADKQLQVKASDFQSGKTVGSETA LLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALPPLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAI QETISASNGNQLLARHGTIADAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLKFSLNDADLLVDAKRTPSALD VQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHDTVPGSLLPGKSFAVDLRA
Sequences:
>Translated_618_residues MTQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTLMLKVPQQAAVSSLTAATLVA LAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLGDASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGE LKLMVDPIKAEAKVSLEAIGGKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADKQLQVKASDFQSGKTVGSETA LLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALPPLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAI QETISASNGNQLLARHGTIADAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLKFSLNDADLLVDAKRTPSALD VQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHDTVPGSLLPGKSFAVDLRA >Mature_617_residues TQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTLMLKVPQQAAVSSLTAATLVAL APSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLGDASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGEL KLMVDPIKAEAKVSLEAIGGKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQS NIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADKQLQVKASDFQSGKTVGSETAL LQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALPPLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAIQ ETISASNGNQLLARHGTIADAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDSL MQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLKFSLNDADLLVDAKRTPSALDV QLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHDTVPGSLLPGKSFAVDLRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66074; Mature: 65942
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTL CCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCHHHHCCCEE MLKVPQQAAVSSLTAATLVALAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLG EEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEE DASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGELKLMVDPIKAEAKVSLEAIG CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHEEEEEECCCEEEEECCCCCCCEEEEECCC GKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADK CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC QLQVKASDFQSGKTVGSETALLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALP EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC PLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAIQETISASNGNQLLARHGTIA CCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCEEEECCCCHH DAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS HHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHH LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLK HHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEE FSLNDADLLVDAKRTPSALDVQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHD EECCCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC TVPGSLLPGKSFAVDLRA CCCCCCCCCCCCEEEECC >Mature Secondary Structure TQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTL CHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCHHHHCCCEE MLKVPQQAAVSSLTAATLVALAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLG EEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEE DASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGELKLMVDPIKAEAKVSLEAIG CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHEEEEEECCCEEEEECCCCCCCEEEEECCC GKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADK CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC QLQVKASDFQSGKTVGSETALLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALP EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC PLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAIQETISASNGNQLLARHGTIA CCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCEEEECCCCHH DAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS HHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHH LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLK HHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEE FSLNDADLLVDAKRTPSALDVQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHD EECCCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC TVPGSLLPGKSFAVDLRA CCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA