Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775404

Identifier: 119775404

GI number: 119775404

Start: 2735660

End: 2737516

Strand: Direct

Name: 119775404

Synonym: Sama_2269

Alternate gene names: NA

Gene position: 2735660-2737516 (Clockwise)

Preceding gene: 119775401

Following gene: 119775405

Centisome position: 63.53

GC content: 53.74

Gene sequence:

>1857_bases
ATGACTCAAATCAGCGCACTCACATCAATACTGACCAGCAATTCAAGCACAGGAGCTGAAACAAGTTTGCTGCCAGTCAG
GCTGAGTCAAACACAGGGCGCTGCGATACTCACCATCGCAAATACCAGCTATCTCATAAAGCCGCCGGTTGACCTGTCCC
AATTTTCGGCACAAACACTGATGTTGAAAGTGCCCCAGCAGGCAGCCGTTTCGTCTCTCACGGCCGCGACTCTGGTCGCC
CTCGCCCCCAGCATCCAGCTCCCCTTCCCTGGCGCCTTGGCAGAACAGATTCGCCGCCTTGGCATTGATACAGAGAAGCT
GCTGTCGCTGACCAAGAGCCCTGGTGGTTACCTGCTGGGAGACGCCAGCTATACCAATGGGCAGTTGCGCTTTAAAGGCG
GCTTTCAGTTGCCCTTACCCTCGCTGAAACCGCCACAGCCTGAGCTGATGAGGGCCAGAATCGTCTTAAAGGAAGGTGAG
CTTAAACTCATGGTCGACCCTATTAAGGCCGAAGCAAAAGTCAGCCTGGAGGCCATCGGTGGCAAAACAGCTCCTGTGAC
GAAAAACCTATTAACGGCCCCTGTGACACAAGAAGCCATTCTGAGCTCGCTGCAAAGAAAACTGACGGGCCAAACTGTCA
ATCACATCAACACCAGCAGCACAGAAAACACCAGCAAACCTGCGATGCCAGCACCCAAGCCATCGGATGGGAGTGGCCAA
AGCAATATCAAAGCAGAAACTCCGGTAACAGACAGTAAATCCAGCGCGCCAAACACACTCGCCGCCCCTGATAAGCCCGA
AAAGGCACCCGCCCCTTCTGTTGCTGAGGCCAAAAAGCAACTTACAGAACCTGTTAGCAGCAAAATGGCAGATAGTGCGG
ATAAGGCTCAGGCCGATAAGCAGTTACAGGTAAAAGCGTCTGACTTTCAGTCAGGTAAGACAGTCGGCAGCGAAACTGCT
CTTCTCCAAAAGAGCACTGCAGACATGAACGGTGAGCCAGAGCGTAAAGCGCAAGTAGGCACTCACCTTGCTGCAGAGAA
AAGACTCTTAATGAACCTCGATAAAAGCGGGGCGCTTCCCCCGCTAAAATTAGCAGACATTGAAGAAACGTCTCCCATCA
CAACGCCAGACGCGGCTCGTCGTTTACTTGCCCTGTTGAAACCACTGCCAGTGAACATGCTACTGGGCGGCATGGCGATA
CAGGAGACCATCTCTGCTTCAAACGGAAACCAGCTTTTGGCCCGCCACGGAACCATTGCTGATGCGGTATTGCACCAACC
CCTGGCGATGGTGTTTCAATTGCTGCTTGGAGGCGCCGCCCTTAAACGCGAGCACTCACTTACCCCACTGATGACGCAGT
GGCTCAATGTGGCGGCTAAGGGCACCGGGATCAGCCTGGCAGACGCCATAACCCTCGCCGATGACGATACCCTTGATTCG
TTAATGCAACTTGCGCAGGTAAGGCGTGAATATGCAGAAGCCAGTAATCCAAGGGACGGTTGGTTCTTTTGCCTGCCTTA
CCTTATGGGTGAAAAGCAGCGGCAGCTGGAAGGCCATTGGCAACGTCAAGCTAACCAGGAGCAGGATGACCACCAAGAAA
GCTGGCGTCTCAAGCTTAAGTTTTCTTTGAATGATGCAGATCTGCTGGTTGACGCCAAACGCACGCCCAGTGCGCTGGAT
GTGCAGCTTGTCTGCAGTCAGGAGAAACTCAATAACCGGGTAGGAAATTATCTGCCTGTGCTGCAGGCACACCTGCAGTC
ATTGGGCTTTGGCACCACAATACTTTCCTGTCGCCACGATACCGTGCCCGGCAGTCTGCTGCCCGGCAAATCCTTTGCCG
TGGATTTAAGGGCCTGA

Upstream 100 bases:

>100_bases
AGACGCTATGAAGTGATTTATTCAGTATCCAGGCTCTTTACATAGCACAGCACCGCAAATTCAGGACCGCGACGAGACTC
ACTTGCACCCGAGCTAAAAC

Downstream 100 bases:

>100_bases
GCATGAATAAACAAGACAAGATAGCGGTAGCCTTAAGTTACGACGGTAACGGGGCGCCCAAAGTCACAGCCAAAGGCGAG
GCCTTACTTGCAGAGGAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 618; Mature: 617

Protein sequence:

>618_residues
MTQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTLMLKVPQQAAVSSLTAATLVA
LAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLGDASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGE
LKLMVDPIKAEAKVSLEAIGGKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ
SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADKQLQVKASDFQSGKTVGSETA
LLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALPPLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAI
QETISASNGNQLLARHGTIADAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS
LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLKFSLNDADLLVDAKRTPSALD
VQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHDTVPGSLLPGKSFAVDLRA

Sequences:

>Translated_618_residues
MTQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTLMLKVPQQAAVSSLTAATLVA
LAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLGDASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGE
LKLMVDPIKAEAKVSLEAIGGKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ
SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADKQLQVKASDFQSGKTVGSETA
LLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALPPLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAI
QETISASNGNQLLARHGTIADAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS
LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLKFSLNDADLLVDAKRTPSALD
VQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHDTVPGSLLPGKSFAVDLRA
>Mature_617_residues
TQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTLMLKVPQQAAVSSLTAATLVAL
APSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLGDASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGEL
KLMVDPIKAEAKVSLEAIGGKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQS
NIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADKQLQVKASDFQSGKTVGSETAL
LQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALPPLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAIQ
ETISASNGNQLLARHGTIADAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDSL
MQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLKFSLNDADLLVDAKRTPSALDV
QLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHDTVPGSLLPGKSFAVDLRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66074; Mature: 65942

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTL
CCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCHHHHCCCEE
MLKVPQQAAVSSLTAATLVALAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLG
EEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEE
DASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGELKLMVDPIKAEAKVSLEAIG
CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHEEEEEECCCEEEEECCCCCCCEEEEECCC
GKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ
CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADK
CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
QLQVKASDFQSGKTVGSETALLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALP
EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAIQETISASNGNQLLARHGTIA
CCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCEEEECCCCHH
DAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS
HHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHH
LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLK
HHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
FSLNDADLLVDAKRTPSALDVQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHD
EECCCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
TVPGSLLPGKSFAVDLRA
CCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
TQISALTSILTSNSSTGAETSLLPVRLSQTQGAAILTIANTSYLIKPPVDLSQFSAQTL
CHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEECCCCHHHHCCCEE
MLKVPQQAAVSSLTAATLVALAPSIQLPFPGALAEQIRRLGIDTEKLLSLTKSPGGYLLG
EEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEE
DASYTNGQLRFKGGFQLPLPSLKPPQPELMRARIVLKEGELKLMVDPIKAEAKVSLEAIG
CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHEEEEEECCCEEEEECCCCCCCEEEEECCC
GKTAPVTKNLLTAPVTQEAILSSLQRKLTGQTVNHINTSSTENTSKPAMPAPKPSDGSGQ
CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
SNIKAETPVTDSKSSAPNTLAAPDKPEKAPAPSVAEAKKQLTEPVSSKMADSADKAQADK
CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
QLQVKASDFQSGKTVGSETALLQKSTADMNGEPERKAQVGTHLAAEKRLLMNLDKSGALP
EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLKLADIEETSPITTPDAARRLLALLKPLPVNMLLGGMAIQETISASNGNQLLARHGTIA
CCEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCEEEECCCCHH
DAVLHQPLAMVFQLLLGGAALKREHSLTPLMTQWLNVAAKGTGISLADAITLADDDTLDS
HHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHHHH
LMQLAQVRREYAEASNPRDGWFFCLPYLMGEKQRQLEGHWQRQANQEQDDHQESWRLKLK
HHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
FSLNDADLLVDAKRTPSALDVQLVCSQEKLNNRVGNYLPVLQAHLQSLGFGTTILSCRHD
EECCCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
TVPGSLLPGKSFAVDLRA
CCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA