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The map label for this gene is ycdX [C]

Identifier: 119775368

GI number: 119775368

Start: 2697441

End: 2698196

Strand: Reverse

Name: ycdX [C]

Synonym: Sama_2233

Alternate gene names: 119775368

Gene position: 2698196-2697441 (Counterclockwise)

Preceding gene: 119775370

Following gene: 119775367

Centisome position: 62.66

GC content: 53.84

Gene sequence:

>756_bases
ATGCAGTTTCCGGTCGATACTCACAGCCACACAGTGGCGTCCACCCATGCCTACAGTACCATCCATGATTATCTGGCGGT
GGCGAAGGAAAAGGGCATTCGCCTGTTTGCCACCACGGACCATGGTCCGGCGATGAAAGATGCACCGCATTTCTGGCATT
TTGTGAATTTACGTGTGCTGCCCAGAATATGGAATGGGGTGGGGATTCTGCGGGGTATTGAAGCCAACATCATGAATGAA
AAAGGCGAAATTGATTATTTCGGCGAGTATCTGTCGGAGCTTGATCTGGTGCAGGCCGGATTTCATGAGCCTGTGTTTGC
CCCCGCCGACAGGCTTACCCACACCCGCGCCATGATAGCCACCATGGAGTCGGGGCTGGTAGATATCATCACGCATCCGG
GTAACCCGGCGTACCCCATTGATGTGGAGGCGGTGGTCGGTGCTGCCAAGGCATGCAATGTGGCGCTGGAAATCAACAAC
TCTTCTTTTACGGCTTCCCGTAAGGGCAGCGAAGAGAATTGTCTTGCCATAGCGCGAATGGCCACAAAATTGGACGCCCA
ATTGGTGATGGGATCTGATGCCCACGTTGCCTTTGATTTGGGGGGATTTGACCGCTCGCTGGCTATTGTGGATGCCGCCG
ATTATCCCCGCCAGCGGCTCCTTAATGAGAGCCCTATGGCGTTATTGCATTTTTTACAGCAACGGGGCCATCAACATCTT
GACGAACTCATCCGCTATTTCAGGCCGGTGCTCTGA

Upstream 100 bases:

>100_bases
TGAGAGCCGTGATGAGCAGACAATAAAAGATGGGCACTCATCTCGAAACTGAGCTGTGACAACTGCTAGAGTGTTATCCA
AAGCCATGAAGGAGAATCCC

Downstream 100 bases:

>100_bases
ACTGGCCGCTTGATTGGGTTGCCAGACCTCGCAGCTGGATATGGCGGCTGGGCCACCCGTGTTCGCCCTGAATACGAATG
CACAGCCTCAGGCAGGTCTT

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MQFPVDTHSHTVASTHAYSTIHDYLAVAKEKGIRLFATTDHGPAMKDAPHFWHFVNLRVLPRIWNGVGILRGIEANIMNE
KGEIDYFGEYLSELDLVQAGFHEPVFAPADRLTHTRAMIATMESGLVDIITHPGNPAYPIDVEAVVGAAKACNVALEINN
SSFTASRKGSEENCLAIARMATKLDAQLVMGSDAHVAFDLGGFDRSLAIVDAADYPRQRLLNESPMALLHFLQQRGHQHL
DELIRYFRPVL

Sequences:

>Translated_251_residues
MQFPVDTHSHTVASTHAYSTIHDYLAVAKEKGIRLFATTDHGPAMKDAPHFWHFVNLRVLPRIWNGVGILRGIEANIMNE
KGEIDYFGEYLSELDLVQAGFHEPVFAPADRLTHTRAMIATMESGLVDIITHPGNPAYPIDVEAVVGAAKACNVALEINN
SSFTASRKGSEENCLAIARMATKLDAQLVMGSDAHVAFDLGGFDRSLAIVDAADYPRQRLLNESPMALLHFLQQRGHQHL
DELIRYFRPVL
>Mature_251_residues
MQFPVDTHSHTVASTHAYSTIHDYLAVAKEKGIRLFATTDHGPAMKDAPHFWHFVNLRVLPRIWNGVGILRGIEANIMNE
KGEIDYFGEYLSELDLVQAGFHEPVFAPADRLTHTRAMIATMESGLVDIITHPGNPAYPIDVEAVVGAAKACNVALEINN
SSFTASRKGSEENCLAIARMATKLDAQLVMGSDAHVAFDLGGFDRSLAIVDAADYPRQRLLNESPMALLHFLQQRGHQHL
DELIRYFRPVL

Specific function: Unknown

COG id: COG1387

COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHP family

Homologues:

Organism=Escherichia coli, GI1787271, Length=234, Percent_Identity=61.5384615384615, Blast_Score=289, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2233_SHEAM (A1S7T2)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_928108.1
- ProteinModelPortal:   A1S7T2
- SMR:   A1S7T2
- STRING:   A1S7T2
- GeneID:   4604483
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_2233
- NMPDR:   fig|326297.7.peg.2097
- eggNOG:   COG1387
- HOGENOM:   HBG734021
- OMA:   HTIASTH
- PhylomeDB:   A1S7T2
- ProtClustDB:   PRK09248
- HAMAP:   MF_01561
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195
- SMART:   SM00481

Pfam domain/function: PF02811 PHP; SSF89550 PHP-like

EC number: NA

Molecular weight: Translated: 27813; Mature: 27813

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFPVDTHSHTVASTHAYSTIHDYLAVAKEKGIRLFATTDHGPAMKDAPHFWHFVNLRVL
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEHHHHH
PRIWNGVGILRGIEANIMNEKGEIDYFGEYLSELDLVQAGFHEPVFAPADRLTHTRAMIA
HHHHCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TMESGLVDIITHPGNPAYPIDVEAVVGAAKACNVALEINNSSFTASRKGSEENCLAIARM
HHHCCCEEEEECCCCCCCCEEHHHHHHHHHHCEEEEEECCCEEECCCCCCCHHHHHHHHH
ATKLDAQLVMGSDAHVAFDLGGFDRSLAIVDAADYPRQRLLNESPMALLHFLQQRGHQHL
HHHHHHEEEECCCCEEEEEECCCCCEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHH
DELIRYFRPVL
HHHHHHHHCCC
>Mature Secondary Structure
MQFPVDTHSHTVASTHAYSTIHDYLAVAKEKGIRLFATTDHGPAMKDAPHFWHFVNLRVL
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEEHHHHH
PRIWNGVGILRGIEANIMNEKGEIDYFGEYLSELDLVQAGFHEPVFAPADRLTHTRAMIA
HHHHCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
TMESGLVDIITHPGNPAYPIDVEAVVGAAKACNVALEINNSSFTASRKGSEENCLAIARM
HHHCCCEEEEECCCCCCCCEEHHHHHHHHHHCEEEEEECCCEEECCCCCCCHHHHHHHHH
ATKLDAQLVMGSDAHVAFDLGGFDRSLAIVDAADYPRQRLLNESPMALLHFLQQRGHQHL
HHHHHHEEEECCCCEEEEEECCCCCEEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHH
DELIRYFRPVL
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA