| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is cysQ [H]
Identifier: 119775367
GI number: 119775367
Start: 2696411
End: 2697256
Strand: Reverse
Name: cysQ [H]
Synonym: Sama_2232
Alternate gene names: 119775367
Gene position: 2697256-2696411 (Counterclockwise)
Preceding gene: 119775368
Following gene: 119775366
Centisome position: 62.64
GC content: 57.21
Gene sequence:
>846_bases ATGGCGGTTTTTGCTTGGCCAGAACATCACGGACCACAGGTTGCAGGAGGATATATGACATTGGTGGCATTGGATAAAAC GACACTGGATAAGCTGGGGCAGATAGCCCGTCAGGCTGGTGCGGCCATAATGGCAGTGTACGGGCAGGGTGACGTGGCCG TGACTCAGAAAAGCGACGACAGCCCGGTGACTGCCGCTGATTTGGCCAGCCATACCGTGATAATCGAGCAGCTCGCTGCG GCCTTTCCGTTTACACCGGTGCTGTCAGAAGAGGCCGTTATTGACTGGGAAACCCGCCGTCAGTGGCAGGAGTACTTCCT TATCGATCCCCTCGATGGCACCAAGGAGTTTATCAAGCGCAATGGTGAGTTTACCGTCAATATTGCGCTGGTGAGAGATG GCATTGCCGTAGCCGGTGTGGTGTTTGCCCCCGTCCTGGATACCTGTTATCTCGGAGCAGAGGGACTGGGCGCCTGGCTC GAGTGTCAGGGAAAGCAGCAACCATTGCAGGGTAGTGCGCAAAAACGCGACGTTCCCGTGGTTGTTGGCAGTCGCTCACA TCAGTCTGCCGAGATGGCGGGTTATTTGGCCGACCTTGGCGACCATGAGCTTCTCAGTGTGGGCAGCTCGCTTAAATTTT GCATGCTTGCCGAAGGGCGGGCAGACCTGTACCCGCGTCTTGGGCCAACCAGCGAGTGGGACACGGCAGCTGCCCAGGCG GTGCTGGAGAGCGCCGGGGGCAGGGTGGTGGTGTATGGCGAGTCCAACCCGCTGGTTTACAACAAAAAAGAACAGCTTCT TAACCCTTGGTTTATGGCAACTGCCCCGGGGTGGAACACTCATTAA
Upstream 100 bases:
>100_bases GCCTCAGGCAGGTCTTTTCTCAGAGCAGGTGCTGCCTTAGTATCTTTGGCACTGAATTTAACGAAATTGTTATTATTTCC TACCGGGTGCCAGTGGCATA
Downstream 100 bases:
>100_bases CAGCCCAGGCTGAAATGGAGAAAGCAGATGATGCGAATGGGGGTGGATCTCGGTGGCACCAAGATTGAGCTGGTGGCCTT GGGAGAAGATGGCAGTGAGC
Product: cysQ protein
Products: NA
Alternate protein names: 3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase; 3'-phosphoadenosine 5'-phosphate phosphatase; PAP phosphatase; DPNPase [H]
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MAVFAWPEHHGPQVAGGYMTLVALDKTTLDKLGQIARQAGAAIMAVYGQGDVAVTQKSDDSPVTAADLASHTVIIEQLAA AFPFTPVLSEEAVIDWETRRQWQEYFLIDPLDGTKEFIKRNGEFTVNIALVRDGIAVAGVVFAPVLDTCYLGAEGLGAWL ECQGKQQPLQGSAQKRDVPVVVGSRSHQSAEMAGYLADLGDHELLSVGSSLKFCMLAEGRADLYPRLGPTSEWDTAAAQA VLESAGGRVVVYGESNPLVYNKKEQLLNPWFMATAPGWNTH
Sequences:
>Translated_281_residues MAVFAWPEHHGPQVAGGYMTLVALDKTTLDKLGQIARQAGAAIMAVYGQGDVAVTQKSDDSPVTAADLASHTVIIEQLAA AFPFTPVLSEEAVIDWETRRQWQEYFLIDPLDGTKEFIKRNGEFTVNIALVRDGIAVAGVVFAPVLDTCYLGAEGLGAWL ECQGKQQPLQGSAQKRDVPVVVGSRSHQSAEMAGYLADLGDHELLSVGSSLKFCMLAEGRADLYPRLGPTSEWDTAAAQA VLESAGGRVVVYGESNPLVYNKKEQLLNPWFMATAPGWNTH >Mature_280_residues AVFAWPEHHGPQVAGGYMTLVALDKTTLDKLGQIARQAGAAIMAVYGQGDVAVTQKSDDSPVTAADLASHTVIIEQLAAA FPFTPVLSEEAVIDWETRRQWQEYFLIDPLDGTKEFIKRNGEFTVNIALVRDGIAVAGVVFAPVLDTCYLGAEGLGAWLE CQGKQQPLQGSAQKRDVPVVVGSRSHQSAEMAGYLADLGDHELLSVGSSLKFCMLAEGRADLYPRLGPTSEWDTAAAQAV LESAGGRVVVYGESNPLVYNKKEQLLNPWFMATAPGWNTH
Specific function: Converts 3'(2')-phosphoadenosine 5'-phosphate (PAP) to AMP. May also convert adenosine 3'-phosphate 5'-phosphosulfate (PAPS) to adenosine 5'-phosphosulfate (APS) [H]
COG id: COG1218
COG function: function code P; 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
Gene ontology:
Cell location: Cytoplasm. Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the inositol monophosphatase family [H]
Homologues:
Organism=Homo sapiens, GI116812595, Length=277, Percent_Identity=27.4368231046931, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI7657236, Length=236, Percent_Identity=29.2372881355932, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI221625487, Length=226, Percent_Identity=27.4336283185841, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031789, Length=226, Percent_Identity=27.4336283185841, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1790659, Length=249, Percent_Identity=53.4136546184739, Blast_Score=233, Evalue=1e-62, Organism=Escherichia coli, GI1788882, Length=221, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71995905, Length=270, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71995897, Length=270, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193202572, Length=242, Percent_Identity=26.0330578512397, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320493, Length=206, Percent_Identity=29.6116504854369, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24664926, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006240 - InterPro: IPR020583 - InterPro: IPR000760 - InterPro: IPR020550 [H]
Pfam domain/function: PF00459 Inositol_P [H]
EC number: =3.1.3.7 [H]
Molecular weight: Translated: 30275; Mature: 30143
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00629 IMP_1 ; PS00630 IMP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVFAWPEHHGPQVAGGYMTLVALDKTTLDKLGQIARQAGAAIMAVYGQGDVAVTQKSDD CEEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCC SPVTAADLASHTVIIEQLAAAFPFTPVLSEEAVIDWETRRQWQEYFLIDPLDGTKEFIKR CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHEEEECCCCCHHHHHHC NGEFTVNIALVRDGIAVAGVVFAPVLDTCYLGAEGLGAWLECQGKQQPLQGSAQKRDVPV CCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCE VVGSRSHQSAEMAGYLADLGDHELLSVGSSLKFCMLAEGRADLYPRLGPTSEWDTAAAQA EECCCCCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHH VLESAGGRVVVYGESNPLVYNKKEQLLNPWFMATAPGWNTH HHHHCCCEEEEEECCCCEEECCHHHHCCCEEEEECCCCCCC >Mature Secondary Structure AVFAWPEHHGPQVAGGYMTLVALDKTTLDKLGQIARQAGAAIMAVYGQGDVAVTQKSDD EEEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCC SPVTAADLASHTVIIEQLAAAFPFTPVLSEEAVIDWETRRQWQEYFLIDPLDGTKEFIKR CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHEEEECCCCCHHHHHHC NGEFTVNIALVRDGIAVAGVVFAPVLDTCYLGAEGLGAWLECQGKQQPLQGSAQKRDVPV CCCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCE VVGSRSHQSAEMAGYLADLGDHELLSVGSSLKFCMLAEGRADLYPRLGPTSEWDTAAAQA EECCCCCCHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHH VLESAGGRVVVYGESNPLVYNKKEQLLNPWFMATAPGWNTH HHHHCCCEEEEEECCCCEEECCHHHHCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]