| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is sstT
Identifier: 119775335
GI number: 119775335
Start: 2657360
End: 2658577
Strand: Reverse
Name: sstT
Synonym: Sama_2200
Alternate gene names: 119775335
Gene position: 2658577-2657360 (Counterclockwise)
Preceding gene: 119775336
Following gene: 119775334
Centisome position: 61.74
GC content: 56.81
Gene sequence:
>1218_bases ATGAGTACTGAAAAATCATTGCTGGCAAATGCTGCCGGTGGCAGCCTGGTGCTGCAAATTTTTGTGGGGATCATCGCCGG TGTGGCCCTGGCCGGATTCAGCCCTGAGGCTGCCAATCAGGTCGCTTTCCTGGGTGACCTCTTTGTGGGAGCGCTCAAGG CCATCGCGCCCGTACTGGTGTTTGTGCTGGTTGCATCGTCAATCGCCAATCAGGTGTCAGGTGCGCAGACCAATATGCGT CCCATCATCCTGTTATATCTGGTGGGTACCTTTGCTGCGGCGCTGACGGCGGTACTGATGAGTTTTGCCTTCCCGACCAG CCTTGTTCTGATTGATGCGGCCGCAGGCGCCAATCCGCCAGAGGGGATAGGTCAGGTGCTCAACACCTTGCTGTTCAAAC TGGTGGATAACCCGGTTAATGCCCTGATTAACGCCAACTATATTGGTCTGCTCGCATGGGGTGTGGGGCTGGGCATCGCG CTGCGTCACGCAAGCACCAGCACCAAAAACATGCTGCATGATGTCAGCCACGGCGTGTCTCAGCTGGTGCGTTTCGTTAT CTGTCTCGCACCGATAGGGATTTTTGGCCTGGTGGCTGCCACTATCGCTCAAACCGGCTTTGAGGCCCTGGCGGCCTATG CCCAACTGCTTGGCGTATTGCTTGGGGCCATGGCAGTGATAGCCTTTGTGGTTAACCCGCTGATTGTATTTTTGAAAATT CGTCGCAACCCTTATCCGTTGGTGTTCAAGTGCCTGCGCGAAAGTGGTGTTACTGCGTTCTTTACCCGCTCCAGCGCAGC CAATATTCCGGTGAACATGGCGCTCTGCGAGCGTCTAAAGCTGCATGAGGATACTTACTCAGTCTCTATCCCCCTGGGGG CGACCATCAATATGGCCGGTGCCGCCATCACCATCACCGTGCTCACGCTGGCGGCTGTGCATACCCTGGGTATTGAAGTC GACCTGGCCACAGCGCTGTTGCTCAGTGTTATTGCGGCTGTTTCGGCCTGCGGCGCTTCAGGCGTGGCCGGTGGCTCTTT GCTGCTTATCCCGCTTGCGTGCTCCTTGTTTGGCATTTCCAACGATATCGCGATGCAGGTAGTGGCCGTAGGCTTCACCA TAGGCGTCATCCAGGACAGCGCTGAGACCGCACTGAACAGTTCCACCGACGTGCTCTTTACCGCAGCGGCCTGTGAAGCG GCAGAGCGCAAAGCCTAA
Upstream 100 bases:
>100_bases TTGCTGGACAAAGCCTCTGCTTTTCGATACAACCCAAAGCCGGGATGCAAAGTCCTTAAGGCCCCAGTGGCCCATAACGA TAACAACGACAGGTCAAGTC
Downstream 100 bases:
>100_bases GTTGCTAACAATGACAAATGGCTGAAAAAGCGGCAGTATTAAGTTACTGCCGCTTTTTTATTGTCAGCGAAAAAGATCCC GGGAGGTCACAGATGCGACT
Product: serine/threonine transporter SstT
Products: NA
Alternate protein names: Na(+)/serine-threonine symporter
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSTEKSLLANAAGGSLVLQIFVGIIAGVALAGFSPEAANQVAFLGDLFVGALKAIAPVLVFVLVASSIANQVSGAQTNMR PIILLYLVGTFAAALTAVLMSFAFPTSLVLIDAAAGANPPEGIGQVLNTLLFKLVDNPVNALINANYIGLLAWGVGLGIA LRHASTSTKNMLHDVSHGVSQLVRFVICLAPIGIFGLVAATIAQTGFEALAAYAQLLGVLLGAMAVIAFVVNPLIVFLKI RRNPYPLVFKCLRESGVTAFFTRSSAANIPVNMALCERLKLHEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIEV DLATALLLSVIAAVSACGASGVAGGSLLLIPLACSLFGISNDIAMQVVAVGFTIGVIQDSAETALNSSTDVLFTAAACEA AERKA
Sequences:
>Translated_405_residues MSTEKSLLANAAGGSLVLQIFVGIIAGVALAGFSPEAANQVAFLGDLFVGALKAIAPVLVFVLVASSIANQVSGAQTNMR PIILLYLVGTFAAALTAVLMSFAFPTSLVLIDAAAGANPPEGIGQVLNTLLFKLVDNPVNALINANYIGLLAWGVGLGIA LRHASTSTKNMLHDVSHGVSQLVRFVICLAPIGIFGLVAATIAQTGFEALAAYAQLLGVLLGAMAVIAFVVNPLIVFLKI RRNPYPLVFKCLRESGVTAFFTRSSAANIPVNMALCERLKLHEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIEV DLATALLLSVIAAVSACGASGVAGGSLLLIPLACSLFGISNDIAMQVVAVGFTIGVIQDSAETALNSSTDVLFTAAACEA AERKA >Mature_404_residues STEKSLLANAAGGSLVLQIFVGIIAGVALAGFSPEAANQVAFLGDLFVGALKAIAPVLVFVLVASSIANQVSGAQTNMRP IILLYLVGTFAAALTAVLMSFAFPTSLVLIDAAAGANPPEGIGQVLNTLLFKLVDNPVNALINANYIGLLAWGVGLGIAL RHASTSTKNMLHDVSHGVSQLVRFVICLAPIGIFGLVAATIAQTGFEALAAYAQLLGVLLGAMAVIAFVVNPLIVFLKIR RNPYPLVFKCLRESGVTAFFTRSSAANIPVNMALCERLKLHEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGIEVD LATALLLSVIAAVSACGASGVAGGSLLLIPLACSLFGISNDIAMQVVAVGFTIGVIQDSAETALNSSTDVLFTAAACEAA ERKA
Specific function: Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
COG id: COG3633
COG function: function code E; Na+/serine symporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family
Homologues:
Organism=Homo sapiens, GI4827012, Length=267, Percent_Identity=25.4681647940075, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI223468564, Length=256, Percent_Identity=28.515625, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI223468566, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI5032093, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI66773030, Length=232, Percent_Identity=22.8448275862069, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI21314632, Length=259, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI169790839, Length=267, Percent_Identity=23.9700374531835, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1789473, Length=406, Percent_Identity=66.5024630541872, Blast_Score=516, Evalue=1e-148, Organism=Escherichia coli, GI1789947, Length=361, Percent_Identity=25.7617728531856, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1790514, Length=423, Percent_Identity=21.7494089834515, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17537407, Length=430, Percent_Identity=24.6511627906977, Blast_Score=90, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71996953, Length=269, Percent_Identity=28.2527881040892, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71983099, Length=276, Percent_Identity=25.3623188405797, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71983106, Length=276, Percent_Identity=25.3623188405797, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193206505, Length=424, Percent_Identity=23.1132075471698, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24583025, Length=433, Percent_Identity=24.7113163972286, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI17137668, Length=433, Percent_Identity=24.7113163972286, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24583023, Length=433, Percent_Identity=24.7113163972286, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SSTT_SHEAM (A1S7P9)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928075.1 - ProteinModelPortal: A1S7P9 - SMR: A1S7P9 - STRING: A1S7P9 - GeneID: 4604450 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2200 - NMPDR: fig|326297.7.peg.2067 - eggNOG: COG3633 - HOGENOM: HBG289387 - OMA: THIRPIL - PhylomeDB: A1S7P9 - ProtClustDB: PRK13628 - HAMAP: MF_01582 - InterPro: IPR001991 - InterPro: IPR023025 - PANTHER: PTHR11958 - PRINTS: PR00173
Pfam domain/function: PF00375 SDF
EC number: NA
Molecular weight: Translated: 41414; Mature: 41283
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00713 NA_DICARBOXYL_SYMP_1; PS00714 NA_DICARBOXYL_SYMP_2; PS00435 PEROXIDASE_1 ; PS00099 THIOLASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x13db0e34)-; HASH(0x14b6996c)-; HASH(0x148546f0)-; HASH(0x14b2c8dc)-; HASH(0x14c75a20)-; HASH(0x14d17bc8)-; HASH(0x13f16d30)-; HASH(0x14c0bda4)-;
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEKSLLANAAGGSLVLQIFVGIIAGVALAGFSPEAANQVAFLGDLFVGALKAIAPVLV CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FVLVASSIANQVSGAQTNMRPIILLYLVGTFAAALTAVLMSFAFPTSLVLIDAAAGANPP HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCH EGIGQVLNTLLFKLVDNPVNALINANYIGLLAWGVGLGIALRHASTSTKNMLHDVSHGVS HHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH QLVRFVICLAPIGIFGLVAATIAQTGFEALAAYAQLLGVLLGAMAVIAFVVNPLIVFLKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRNPYPLVFKCLRESGVTAFFTRSSAANIPVNMALCERLKLHEDTYSVSIPLGATINMAG CCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEECCC AAITITVLTLAAVHTLGIEVDLATALLLSVIAAVSACGASGVAGGSLLLIPLACSLFGIS HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC NDIAMQVVAVGFTIGVIQDSAETALNSSTDVLFTAAACEAAERKA CHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEHHHHHHHHCCH >Mature Secondary Structure STEKSLLANAAGGSLVLQIFVGIIAGVALAGFSPEAANQVAFLGDLFVGALKAIAPVLV CCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH FVLVASSIANQVSGAQTNMRPIILLYLVGTFAAALTAVLMSFAFPTSLVLIDAAAGANPP HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCH EGIGQVLNTLLFKLVDNPVNALINANYIGLLAWGVGLGIALRHASTSTKNMLHDVSHGVS HHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH QLVRFVICLAPIGIFGLVAATIAQTGFEALAAYAQLLGVLLGAMAVIAFVVNPLIVFLKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRNPYPLVFKCLRESGVTAFFTRSSAANIPVNMALCERLKLHEDTYSVSIPLGATINMAG CCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEECCC AAITITVLTLAAVHTLGIEVDLATALLLSVIAAVSACGASGVAGGSLLLIPLACSLFGIS HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC NDIAMQVVAVGFTIGVIQDSAETALNSSTDVLFTAAACEAAERKA CHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEHHHHHHHHCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA