Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775334

Identifier: 119775334

GI number: 119775334

Start: 2656764

End: 2657267

Strand: Reverse

Name: 119775334

Synonym: Sama_2199

Alternate gene names: NA

Gene position: 2657267-2656764 (Counterclockwise)

Preceding gene: 119775335

Following gene: 119775333

Centisome position: 61.71

GC content: 56.94

Gene sequence:

>504_bases
ATGCGACTGGTGGACTTTACCGCGCTGGACAGCACCAGAGATTGGTACAGTGTGACCGACGCTCTTATGGGGGGCTTGTC
CAGAGCGCAATTTCAAACATCGCCCAAGGGCCATGGACTGTTCACCGGCTATGTTTCCCGCGCCAATGGGGGTGGTTTTG
CTTCTGTCTATCTGGATTTTGCGCCGAGGGATGTGAGCGCCTTTCAGGGGGTTGAACTGGAAATCGCCGCGCCAGAGCGC
GCCTTTAAAGTGAACCTGAAAGACACACACTGTGGCGATCGCCATGTTTATCAGGCGCCGCTGGGAGACACCTATGCAGG
GCAGGGGCTTTGGCGACGTTACCGCATTCCCTTCAGGCAGTTTGTGGCCATGCGACGGGGCCTGACAGTCACGGCGCCGC
GGCTGGACCTTCATCAGCTAAAAAGCCTGGGTTTGGTGGCTGGCGGTGCAGATGAAGGGGAATTTCAGTTGCCGGTGCGC
AGTATCTCCTTTTATAAGGCTTAA

Upstream 100 bases:

>100_bases
AAGCCTAAGTTGCTAACAATGACAAATGGCTGAAAAAGCGGCAGTATTAAGTTACTGCCGCTTTTTTATTGTCAGCGAAA
AAGATCCCGGGAGGTCACAG

Downstream 100 bases:

>100_bases
CCACACGGCAGTTTAACCAAGTAGCAGCACCAACCTGTGTCTTTTGGGGTATCGTGCTTAACACGATTCTTCGCGCTATG
GGGCCAACCACTCTTTCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDFAPRDVSAFQGVELEIAAPER
AFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQFVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVR
SISFYKA

Sequences:

>Translated_167_residues
MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDFAPRDVSAFQGVELEIAAPER
AFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQFVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVR
SISFYKA
>Mature_167_residues
MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDFAPRDVSAFQGVELEIAAPER
AFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQFVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVR
SISFYKA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18494; Mature: 18494

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDF
CCEEEEEECCCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEE
APRDVSAFQGVELEIAAPERAFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQ
CCCCCHHHCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHH
FVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVRSISFYKA
HHHHHCCCEEECCCCCHHHHHHCCEEECCCCCCEEEEEEEEEEEECC
>Mature Secondary Structure
MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDF
CCEEEEEECCCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEE
APRDVSAFQGVELEIAAPERAFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQ
CCCCCHHHCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHH
FVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVRSISFYKA
HHHHHCCCEEECCCCCHHHHHHCCEEECCCCCCEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA