Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yciI [H]

Identifier: 119775273

GI number: 119775273

Start: 2583736

End: 2584035

Strand: Direct

Name: yciI [H]

Synonym: Sama_2138

Alternate gene names: 119775273

Gene position: 2583736-2584035 (Clockwise)

Preceding gene: 119775272

Following gene: 119775274

Centisome position: 60.0

GC content: 55.67

Gene sequence:

>300_bases
ATGTGGTACATGATTTCATCCCAGGACGTTGCCAACAGTCTCGAAAAACGCCTTGCGGCCCGGCCAGCTCACCTTGCTCG
CCTTCAGGAGCTCGCCGATGAAGGTCGACTGATGATTGCCGGTCCACACCCGGCTATCGATAGTGATAACCCCGGTGAAG
CCGGCTTTACCGGCTCTTTGGTTGTAGCCGAATTTGAATCACTGGAACTCGCCCAGGCCTGGGCCGATGCCGATCCTTAC
ATTGCCGCTGGGGTGTATGAAAAGGTGATCGTAAAGCCCTTTAAGCGAGTGTTGCCCTGA

Upstream 100 bases:

>100_bases
AGGTATTCGGGCTGACCGCCGCCACCCTCGTGAACACACTGCTTACCGTGGTTTACCTGTTCAAACATCTTCCCGAAGAT
AAAAAGAAGGAACTCAAATA

Downstream 100 bases:

>100_bases
TGAAGGTCGTTTCATTTAACATCAATGGCCTGCGATCGCGCCTGCATCAACTTCAAGCGCTGATTGATACCCAGGCGCCT
GATATCATTGGCCTGCAGGA

Product: YciI-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MWYMISSQDVANSLEKRLAARPAHLARLQELADEGRLMIAGPHPAIDSDNPGEAGFTGSLVVAEFESLELAQAWADADPY
IAAGVYEKVIVKPFKRVLP

Sequences:

>Translated_99_residues
MWYMISSQDVANSLEKRLAARPAHLARLQELADEGRLMIAGPHPAIDSDNPGEAGFTGSLVVAEFESLELAQAWADADPY
IAAGVYEKVIVKPFKRVLP
>Mature_99_residues
MWYMISSQDVANSLEKRLAARPAHLARLQELADEGRLMIAGPHPAIDSDNPGEAGFTGSLVVAEFESLELAQAWADADPY
IAAGVYEKVIVKPFKRVLP

Specific function: Unknown

COG id: COG2350

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yciI family [H]

Homologues:

Organism=Escherichia coli, GI87081861, Length=98, Percent_Identity=74.4897959183673, Blast_Score=152, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR005545 [H]

Pfam domain/function: PF03795 YCII [H]

EC number: NA

Molecular weight: Translated: 10793; Mature: 10793

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYMISSQDVANSLEKRLAARPAHLARLQELADEGRLMIAGPHPAIDSDNPGEAGFTGSL
CEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCH
VVAEFESLELAQAWADADPYIAAGVYEKVIVKPFKRVLP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWYMISSQDVANSLEKRLAARPAHLARLQELADEGRLMIAGPHPAIDSDNPGEAGFTGSL
CEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCH
VVAEFESLELAQAWADADPYIAAGVYEKVIVKPFKRVLP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]