Click here to switch to the map view.

The map label for this gene is yecD [C]

Identifier: 119775270

GI number: 119775270

Start: 2581044

End: 2581577

Strand: Direct

Name: yecD [C]

Synonym: Sama_2135

Alternate gene names: 119775270

Gene position: 2581044-2581577 (Clockwise)

Preceding gene: 119775269

Following gene: 119775272

Centisome position: 59.94

GC content: 53.0

Gene sequence:

>534_bases
ATGGCCAAGGCACTGCTAGTGATAGATGTTCAACGACTGCTTTTTGAAGGCGCCACGCCGCCATTCGATTCCGCCAATAT
CATCAAGCGTATCAATCAGCTAACAAAAACCGCCCGCACAGAAGGGGCCGTGGTTATCTTTATTCAGCATGAACAGCCAG
GCACCCCCATCGCCCGCGACGCAGAGGGCTGGGAATTGGTGAGTGACCTGATACAAGATGAGAACGACTACTTCGTGGGA
AAAACCACTCCGGACAGTTTTCAGGGAACCGGGCTGAAAGCCTTACTGGATGAACTGGATGTGGATGCACTGGCTATTTG
CGGCTATGCCAGTGAGTTTTGTGTTGATACCACGGTAAGACGCGCCCTGGCGCTGGGATATCCCGTGGACCTTATCAGCG
ATGCGCACACCACAGCAGACAAGGCGCATCTGGATGCCAAAAGCATCATTGCCCACGAAAATGTGACCCTCTGCAGTATC
AAAAGCTTTGGGGTTGTCGCTTCAGCCGTGAATGCAAATGCATGGCAGCCGTGA

Upstream 100 bases:

>100_bases
GCGATGCCCGAAAGGTTGACTCTCAGTGGCAGCTGAAATACAACTTAATCTATCCGGCACCATTCGGCACTGAGCCGACG
CAGCAGCTAAGGAGTGGCCA

Downstream 100 bases:

>100_bases
GTGACATCTCTGAGAAACCGCCTGCCACAGTAAGCTGTAAATCTCCCCGATCAATGGCCACTCCATGTGGCCAATTGTTT
TTTACCCGCAGCCGAGCCTT

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase; Amidase; Hydrolase; Acetyltransferase GNAT Family; Isochorismatase/Nicotamidase Family Hydrolase; 2 3-Dihydro-2 3-Dihydroxybenzoate Synthetase; Isochorismatase Hydrolase Protein; Acetyltransferase; Isochorismatase Protein; Streptothricin Hydrolase

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MAKALLVIDVQRLLFEGATPPFDSANIIKRINQLTKTARTEGAVVIFIQHEQPGTPIARDAEGWELVSDLIQDENDYFVG
KTTPDSFQGTGLKALLDELDVDALAICGYASEFCVDTTVRRALALGYPVDLISDAHTTADKAHLDAKSIIAHENVTLCSI
KSFGVVASAVNANAWQP

Sequences:

>Translated_177_residues
MAKALLVIDVQRLLFEGATPPFDSANIIKRINQLTKTARTEGAVVIFIQHEQPGTPIARDAEGWELVSDLIQDENDYFVG
KTTPDSFQGTGLKALLDELDVDALAICGYASEFCVDTTVRRALALGYPVDLISDAHTTADKAHLDAKSIIAHENVTLCSI
KSFGVVASAVNANAWQP
>Mature_176_residues
AKALLVIDVQRLLFEGATPPFDSANIIKRINQLTKTARTEGAVVIFIQHEQPGTPIARDAEGWELVSDLIQDENDYFVGK
TTPDSFQGTGLKALLDELDVDALAICGYASEFCVDTTVRRALALGYPVDLISDAHTTADKAHLDAKSIIAHENVTLCSIK
SFGVVASAVNANAWQP

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19098; Mature: 18967

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKALLVIDVQRLLFEGATPPFDSANIIKRINQLTKTARTEGAVVIFIQHEQPGTPIARD
CCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
AEGWELVSDLIQDENDYFVGKTTPDSFQGTGLKALLDELDVDALAICGYASEFCVDTTVR
CCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHH
RALALGYPVDLISDAHTTADKAHLDAKSIIAHENVTLCSIKSFGVVASAVNANAWQP
HHHHHCCCHHHHCCCCCCHHHHHCCHHHHHCCCCEEEEEECCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
AKALLVIDVQRLLFEGATPPFDSANIIKRINQLTKTARTEGAVVIFIQHEQPGTPIARD
CCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
AEGWELVSDLIQDENDYFVGKTTPDSFQGTGLKALLDELDVDALAICGYASEFCVDTTVR
CCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHH
RALALGYPVDLISDAHTTADKAHLDAKSIIAHENVTLCSIKSFGVVASAVNANAWQP
HHHHHCCCHHHHCCCCCCHHHHHCCHHHHHCCCCEEEEEECCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA