Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775142

Identifier: 119775142

GI number: 119775142

Start: 2438680

End: 2439681

Strand: Direct

Name: 119775142

Synonym: Sama_2007

Alternate gene names: NA

Gene position: 2438680-2439681 (Clockwise)

Preceding gene: 119775141

Following gene: 119775143

Centisome position: 56.63

GC content: 53.39

Gene sequence:

>1002_bases
ATGAAAAGTACGGACAAACACGCAGCCTCGCAGGTCGCCACTGTTACTCAGAAATCCTTCACGCAGGGGATGACGGCACT
TATCTTAACTTCCGCACTCTCTGTGTTAGCCTTTTCAAGTAGCGTCCAAGCCACAGTTCAAAACGCGCAATTATCCCAGC
AGCATGCTCCCTGCGTTGATAACAAATGGCCAAAATCTCGACTGTTAAGCCTTGCGGGAAGCCAGTTTGAGATGACGGAC
GCCGACCGGAATGACATGGTGATGAGGTTAATAAGCTGCCTTGCAGACACAGATCCGGAGCTTCGAGACGCGGTTGCCTT
CAGTGGATTAAGCCACTGGCTCAGAGCCAATGACCTTACAAATGAGACGGTAAAGAGCCTGTATACAAAGCTTTCCGGTG
ATGTCCGCAAACGCAAAGATGACCCAAATGGCGTCTATCTTCCCTTTGCCATCCTGACCCTCTCGGAAGTGGCCAGAGTT
GACAGGGTCAGCCCATTTTTTGAACCCGCTGAGCGGGACGCTCTCAGTAAGTTAGCTGCGGACACCATGGCAGGGATCCA
GGATTATCGGGGCTTCGATGAGACGATTGGCTGGCGCCATCAGGTGGCTCACAGTGCAGATTTACTGCTGCAACTCGTCC
TCAATCCGGCGTTGTCATCGGATGACATAATGGAGCTGGTTACATCGATACAGCATCAGCTCAGCCCCGCCGGGCATTTT
TATGTATATGGTGAGCCGGAGCGCCTGGCCCGTCCGGTGCTTTACGCCATGCTAAGGGACGATATCCCTGATAGCTTTTG
GCACAGTCAATTGGCCAGGTGGAGCACACCTGTCCATATCGAAGGCTGGGACAAGGCCTTTAGCTCCAATGCAGGGCTTG
CTGAACGCCATAATCGCCGGGCATTTTTCAGTGCCCTGCTGCTTGGTATCTCAGGCAGCAAGCAGCCCAGATTGCTTGCG
CTGCAGCCAGCAATTCAGGCCGCGATGAAAAAGCTGCCCTGA

Upstream 100 bases:

>100_bases
TTAAACCTTGCCCTGTTCACACCACTCTTGTAGCGTCGGCATCGTAAACGATGGGGTATTCATCCGGACACAAACCTTAA
GGGATTATCAGGGACGCATA

Downstream 100 bases:

>100_bases
GACAACCGCTCGGTGCAGTATCTCAGTTTAATTTGGCCATCCATATGGTAAGATGGCCAAAATCTTATTCCAGGGGCAGG
ACGCAGCATGTCAGATAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVDNKWPKSRLLSLAGSQFEMTD
ADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLTNETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARV
DRVSPFFEPAERDALSKLAADTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF
YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRRAFFSALLLGISGSKQPRLLA
LQPAIQAAMKKLP

Sequences:

>Translated_333_residues
MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVDNKWPKSRLLSLAGSQFEMTD
ADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLTNETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARV
DRVSPFFEPAERDALSKLAADTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF
YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRRAFFSALLLGISGSKQPRLLA
LQPAIQAAMKKLP
>Mature_333_residues
MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVDNKWPKSRLLSLAGSQFEMTD
ADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLTNETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARV
DRVSPFFEPAERDALSKLAADTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF
YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRRAFFSALLLGISGSKQPRLLA
LQPAIQAAMKKLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36862; Mature: 36862

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NKWPKSRLLSLAGSQFEMTDADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLT
CCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
NETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARVDRVSPFFEPAERDALSKLAA
HHHHHHHHHHHCCHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCE
YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRR
EEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHCCCCCHHHHHHHH
AFFSALLLGISGSKQPRLLALQPAIQAAMKKLP
HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCC
>Mature Secondary Structure
MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NKWPKSRLLSLAGSQFEMTDADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLT
CCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
NETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARVDRVSPFFEPAERDALSKLAA
HHHHHHHHHHHCCHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
DTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCE
YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRR
EEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHCCCCCHHHHHHHH
AFFSALLLGISGSKQPRLLALQPAIQAAMKKLP
HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA