| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is chvG [H]
Identifier: 119775141
GI number: 119775141
Start: 2436363
End: 2438522
Strand: Direct
Name: chvG [H]
Synonym: Sama_2006
Alternate gene names: 119775141
Gene position: 2436363-2438522 (Clockwise)
Preceding gene: 119775140
Following gene: 119775142
Centisome position: 56.58
GC content: 54.81
Gene sequence:
>2160_bases ATGATCCGCCTGCCATTGGGTCTTCGCGCCAAAGTCGTTATTCTCTCACTGTTTTTGCTGTGCCTGCCCTGGCTTGGCTA TCAATATGTGTGGGAGATGGAAAAGTACCTGCGTCACGGCCAGGAACGTACCCTTGAAGGCACCACTCAGGCGCTGGCGA CCGCACTGCACGAGCGTCCGAGGCTGTTTGACAGTCAGGCGAGCTTTTTATCCCAGGTCGAAAAACGTAAAGATCTCTAC GCCCACCCGCTATCGGGTCCCATTCAGCTCGACGGAAAACTGGATGATTGGGAACCCTACCGCAGCAAGGCAATGCACTA TGGTGCAGATATGCAGTTAATGAGAGGCTCACAAAGCAGCCTCAGCTTCAATCATATGATTGGGCGATACGGTAATTACC TGTACGCCTTTTTTGAAGTCACTGACCCGACGCCTGTGTATCGCGGCCGCAATAGCCTCAGGGTAGACAGAAATGATTAT CTGGCCATCGCCACCCTCGATGGCAGCAATTTTTTCCACCGCTACGTGGTGGCGACACAGAAAGATGGCTGGGTGAACGC GTTCGAGCTGCCTGCCGACCCTCAGCTCAGTTTGCCAGCGCTGCCGGAGGTGCGTATTCAGGGGCAGTGGCACACCACGG CGCTTGGCTACAACATCGAGCTCAGGATCCCGCTGGAGATGCTGGGCGGCAAAATCAGTTTCGCCCTTCACGATGTCAAC AACCCCAAAAACCGTGAACTGGTGGGGATAACGGGCACCTCCCGCACCGACAGCCCCGATAATCTGGGGACTGTACTTGT ACCTTCTCCGGAAATCGAAGCCATCATCAAAGGCATGGGGCACAACAGCGCCCGCATCTGGGTAGTAGACAGACATGGTC GGGTGCTGGCGCGCTCAGGGGACATTAAAAACAGCGACAGTATCTGGACCAAGGCCATCGGCAACGAACGTCCCGAAGGC GCTTTTGAGCATTGGGTTCAGGAGTATCTTTATCCACTTTACTATCGGGTGCTCACCAAACCGCCTGAGGACTTTATCGA TGGCCTTCAGGACTCCACTGAGCTCGAAGGCAGCCATATTCAAAGGGCACTTTCCGGCAAGCCCGGCAGCACCTGGCGCC TGACCCCGGACAACAAGGCCGTGGTCCTTGCGGCGGCCAGCCCCATTTGGATTGATGACAAGGTTATGGGCGCCGTGGTG GCCGAAGAAACCACCCATGGGATCCGCACCTTAAGAAACCGTGCGCTGGAAAAACTCTTCAATGTGATCCTGACCATCAT GAGCATGGGTACGCTGGCACTGTTTTTCTTTGCCTCCAATATCTCCAGCCGTATCCGTAATCTCAGGGATCAGGCCGAGA GCGCCATTGATGCACAGGGTCGGGTGAAGGCCAGCATCAGTCCGTCACAGTCGCTGGATGAAATTGGCGACTTGTCGCGT TCACTGGCAGGCATGGTGCAACGTCTGTCCCAGTACACCCATTATCTGGAAAATATGTCGTCCCGATTGGGCCACGAACT GAGAACCCCGGTGGCCGTGGTGCGCTCAAGCCTGGAGCATCTTTCAATGCTGAGTCTTGGGGATGACAGACAAAAGTACG TCGACCGCGCCCAGGAAGGCGTGAGTCGCCTGAGTCTCATTCTCGCCAACATGAGCGAAGCCACCCGTTTGGAAGAGTCG CTGTCTCAATCCGACAAGGTACGTTTTGATGCCAAGGCGGTGATAAAGGGCTGTGTTCAGGGTTACCAAATTACCTACCC AGGCGTTGCGTTAGCGCTGACAGTGGATGAGGGAGACTACCCGCTGCGAGGTGTGCCCGAGTACCTGGCGCAGCTTATGG ATAAGCTGATAAGCAATGCACTGGAATTTATGACACCGGGTACACCCATCAATATCAGTCTCAGTCACAGTCATAAAAAG CTGAAACTTTGCGTCACTAATCAGGGGCCATTGTTGCCTGAGGACATGGCAGAGCGCATCTTCGACTCCATGGTCACTGT GAGGCCTCCGGGGCAGGATAATAAACCGCACCTTGGATTGGGTTTGTATATTGCAAGACTGATTGCCGGATTTCACGGCG GCGATATCAAAGCGGAAAATCTCGCCGGTAACGACGGTGTCCGTATATCCGTCTCAATGCCGCTCGAGTCTGCACTTTGA
Upstream 100 bases:
>100_bases ATGTAAAGCGCATTCGCAAAAAATTCATCGCGGCCGACACCGAGTTTGATTGCATCGACACCGTCTATGGCATGGGCTAT CGATGGGACAGCCAGAGTTC
Downstream 100 bases:
>100_bases CTGAAACCAGACAGGCTCAATTGACGAAATAACTGAGCGGCGCTGTGGGCAAGCAGATTAAACCTTGCCCTGTTCACACC ACTCTTGTAGCGTCGGCATC
Product: sensor histidine kinase
Products: NA
Alternate protein names: Histidine kinase sensory protein ExoS [H]
Number of amino acids: Translated: 719; Mature: 719
Protein sequence:
>719_residues MIRLPLGLRAKVVILSLFLLCLPWLGYQYVWEMEKYLRHGQERTLEGTTQALATALHERPRLFDSQASFLSQVEKRKDLY AHPLSGPIQLDGKLDDWEPYRSKAMHYGADMQLMRGSQSSLSFNHMIGRYGNYLYAFFEVTDPTPVYRGRNSLRVDRNDY LAIATLDGSNFFHRYVVATQKDGWVNAFELPADPQLSLPALPEVRIQGQWHTTALGYNIELRIPLEMLGGKISFALHDVN NPKNRELVGITGTSRTDSPDNLGTVLVPSPEIEAIIKGMGHNSARIWVVDRHGRVLARSGDIKNSDSIWTKAIGNERPEG AFEHWVQEYLYPLYYRVLTKPPEDFIDGLQDSTELEGSHIQRALSGKPGSTWRLTPDNKAVVLAAASPIWIDDKVMGAVV AEETTHGIRTLRNRALEKLFNVILTIMSMGTLALFFFASNISSRIRNLRDQAESAIDAQGRVKASISPSQSLDEIGDLSR SLAGMVQRLSQYTHYLENMSSRLGHELRTPVAVVRSSLEHLSMLSLGDDRQKYVDRAQEGVSRLSLILANMSEATRLEES LSQSDKVRFDAKAVIKGCVQGYQITYPGVALALTVDEGDYPLRGVPEYLAQLMDKLISNALEFMTPGTPINISLSHSHKK LKLCVTNQGPLLPEDMAERIFDSMVTVRPPGQDNKPHLGLGLYIARLIAGFHGGDIKAENLAGNDGVRISVSMPLESAL
Sequences:
>Translated_719_residues MIRLPLGLRAKVVILSLFLLCLPWLGYQYVWEMEKYLRHGQERTLEGTTQALATALHERPRLFDSQASFLSQVEKRKDLY AHPLSGPIQLDGKLDDWEPYRSKAMHYGADMQLMRGSQSSLSFNHMIGRYGNYLYAFFEVTDPTPVYRGRNSLRVDRNDY LAIATLDGSNFFHRYVVATQKDGWVNAFELPADPQLSLPALPEVRIQGQWHTTALGYNIELRIPLEMLGGKISFALHDVN NPKNRELVGITGTSRTDSPDNLGTVLVPSPEIEAIIKGMGHNSARIWVVDRHGRVLARSGDIKNSDSIWTKAIGNERPEG AFEHWVQEYLYPLYYRVLTKPPEDFIDGLQDSTELEGSHIQRALSGKPGSTWRLTPDNKAVVLAAASPIWIDDKVMGAVV AEETTHGIRTLRNRALEKLFNVILTIMSMGTLALFFFASNISSRIRNLRDQAESAIDAQGRVKASISPSQSLDEIGDLSR SLAGMVQRLSQYTHYLENMSSRLGHELRTPVAVVRSSLEHLSMLSLGDDRQKYVDRAQEGVSRLSLILANMSEATRLEES LSQSDKVRFDAKAVIKGCVQGYQITYPGVALALTVDEGDYPLRGVPEYLAQLMDKLISNALEFMTPGTPINISLSHSHKK LKLCVTNQGPLLPEDMAERIFDSMVTVRPPGQDNKPHLGLGLYIARLIAGFHGGDIKAENLAGNDGVRISVSMPLESAL >Mature_719_residues MIRLPLGLRAKVVILSLFLLCLPWLGYQYVWEMEKYLRHGQERTLEGTTQALATALHERPRLFDSQASFLSQVEKRKDLY AHPLSGPIQLDGKLDDWEPYRSKAMHYGADMQLMRGSQSSLSFNHMIGRYGNYLYAFFEVTDPTPVYRGRNSLRVDRNDY LAIATLDGSNFFHRYVVATQKDGWVNAFELPADPQLSLPALPEVRIQGQWHTTALGYNIELRIPLEMLGGKISFALHDVN NPKNRELVGITGTSRTDSPDNLGTVLVPSPEIEAIIKGMGHNSARIWVVDRHGRVLARSGDIKNSDSIWTKAIGNERPEG AFEHWVQEYLYPLYYRVLTKPPEDFIDGLQDSTELEGSHIQRALSGKPGSTWRLTPDNKAVVLAAASPIWIDDKVMGAVV AEETTHGIRTLRNRALEKLFNVILTIMSMGTLALFFFASNISSRIRNLRDQAESAIDAQGRVKASISPSQSLDEIGDLSR SLAGMVQRLSQYTHYLENMSSRLGHELRTPVAVVRSSLEHLSMLSLGDDRQKYVDRAQEGVSRLSLILANMSEATRLEES LSQSDKVRFDAKAVIKGCVQGYQITYPGVALALTVDEGDYPLRGVPEYLAQLMDKLISNALEFMTPGTPINISLSHSHKK LKLCVTNQGPLLPEDMAERIFDSMVTVRPPGQDNKPHLGLGLYIARLIAGFHGGDIKAENLAGNDGVRISVSMPLESAL
Specific function: Member of a two-component regulatory system ChvG(ExoS)/ChvI involved in regulating the production of succinoglycan. Activates ChvI by phosphorylation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788393, Length=269, Percent_Identity=25.2788104089219, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI145693157, Length=283, Percent_Identity=25.4416961130742, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 80178; Mature: 80178
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLPLGLRAKVVILSLFLLCLPWLGYQYVWEMEKYLRHGQERTLEGTTQALATALHERP CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHCC RLFDSQASFLSQVEKRKDLYAHPLSGPIQLDGKLDDWEPYRSKAMHYGADMQLMRGSQSS CCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCHHHHCCCCCC LSFNHMIGRYGNYLYAFFEVTDPTPVYRGRNSLRVDRNDYLAIATLDGSNFFHRYVVATQ CHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEEC KDGWVNAFELPADPQLSLPALPEVRIQGQWHTTALGYNIELRIPLEMLGGKISFALHDVN CCCCCEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEEEEEEEEHHHHCCEEEEEEEECC NPKNRELVGITGTSRTDSPDNLGTVLVPSPEIEAIIKGMGHNSARIWVVDRHGRVLARSG CCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEEEEEECCCEEEEECC DIKNSDSIWTKAIGNERPEGAFEHWVQEYLYPLYYRVLTKPPEDFIDGLQDSTELEGSHI CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHH QRALSGKPGSTWRLTPDNKAVVLAAASPIWIDDKVMGAVVAEETTHGIRTLRNRALEKLF HHHHCCCCCCEEEECCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH NVILTIMSMGTLALFFFASNISSRIRNLRDQAESAIDAQGRVKASISPSQSLDEIGDLSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH SLAGMVQRLSQYTHYLENMSSRLGHELRTPVAVVRSSLEHLSMLSLGDDRQKYVDRAQEG HHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VSRLSLILANMSEATRLEESLSQSDKVRFDAKAVIKGCVQGYQITYPGVALALTVDEGDY HHHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCEEECCCEEEEEEECCCCC PLRGVPEYLAQLMDKLISNALEFMTPGTPINISLSHSHKKLKLCVTNQGPLLPEDMAERI CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHH FDSMVTVRPPGQDNKPHLGLGLYIARLIAGFHGGDIKAENLAGNDGVRISVSMPLESAL HHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCHHHCC >Mature Secondary Structure MIRLPLGLRAKVVILSLFLLCLPWLGYQYVWEMEKYLRHGQERTLEGTTQALATALHERP CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHHHCC RLFDSQASFLSQVEKRKDLYAHPLSGPIQLDGKLDDWEPYRSKAMHYGADMQLMRGSQSS CCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCHHHHCCCCCC LSFNHMIGRYGNYLYAFFEVTDPTPVYRGRNSLRVDRNDYLAIATLDGSNFFHRYVVATQ CHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEEC KDGWVNAFELPADPQLSLPALPEVRIQGQWHTTALGYNIELRIPLEMLGGKISFALHDVN CCCCCEEEECCCCCCCCCCCCCCEEEECCEEEEEEEEEEEEEEEHHHHCCEEEEEEEECC NPKNRELVGITGTSRTDSPDNLGTVLVPSPEIEAIIKGMGHNSARIWVVDRHGRVLARSG CCCCCEEEEEECCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCEEEEEEECCCEEEEECC DIKNSDSIWTKAIGNERPEGAFEHWVQEYLYPLYYRVLTKPPEDFIDGLQDSTELEGSHI CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHH QRALSGKPGSTWRLTPDNKAVVLAAASPIWIDDKVMGAVVAEETTHGIRTLRNRALEKLF HHHHCCCCCCEEEECCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH NVILTIMSMGTLALFFFASNISSRIRNLRDQAESAIDAQGRVKASISPSQSLDEIGDLSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH SLAGMVQRLSQYTHYLENMSSRLGHELRTPVAVVRSSLEHLSMLSLGDDRQKYVDRAQEG HHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VSRLSLILANMSEATRLEESLSQSDKVRFDAKAVIKGCVQGYQITYPGVALALTVDEGDY HHHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCEEECCCEEEEEEECCCCC PLRGVPEYLAQLMDKLISNALEFMTPGTPINISLSHSHKKLKLCVTNQGPLLPEDMAERI CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHH FDSMVTVRPPGQDNKPHLGLGLYIARLIAGFHGGDIKAENLAGNDGVRISVSMPLESAL HHHHEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9422587; 11481430; 7559334 [H]