| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is chvI [H]
Identifier: 119775140
GI number: 119775140
Start: 2435671
End: 2436366
Strand: Direct
Name: chvI [H]
Synonym: Sama_2005
Alternate gene names: 119775140
Gene position: 2435671-2436366 (Clockwise)
Preceding gene: 119775136
Following gene: 119775141
Centisome position: 56.56
GC content: 54.02
Gene sequence:
>696_bases ATGAAACGAATTGCCATCGTCGAAGATGAAGCCGCCATCCGCGAAAACTACAAAGATGTGCTCCAGTCCCATGGATATCT GGTGCAAACCTTTGCCAATCGTCCCGATGCCATGCTGGCGTTTCAAACCCGGCTGCCGGATTTGGCCATTATAGATATTG GTCTTGGGGACGAAATCGATGGCGGTTTTACCCTGTGTCAGGGACTCAGAGCCCTGTCGCCCACCATTCCCATCATCTTT TTGACCGCCCGCGACAGTGACTTTGATACCGTCACAGGCCTTCGGCTGGGGGCGGACGACTATTTGTCCAAAGAAGTGAG TTTTCCACATCTGCTGGCTAGGCTGGCCGCGCTGTTTCGCCGCTGTGAACAGCTTAAAGCGCCGGCTACACCGGATAATC TGCTTACCCGTGGGCACCTGACCATAGATGCCAATCGCATTCAGGTGTACTGGCGCGATTTGCCGATTGAACTGACGGTG ACCGAATTTTGGATGGTGCATGCTCTTGCCCGCCACCCGGGCCATGTGAAGAGCCGCACCGAACTGATGCAGGAAGCGAA AATCTACGTCGATGACAGCACCATCACCAGCCATGTAAAGCGCATTCGCAAAAAATTCATCGCGGCCGACACCGAGTTTG ATTGCATCGACACCGTCTATGGCATGGGCTATCGATGGGACAGCCAGAGTTCATGA
Upstream 100 bases:
>100_bases GCCCCAGACTTTCAATGGGGCTAAATTGCTGTATAGTCAGCCATAGATTGAATTAGCCCCTGCAAAAACTGGCCTAGCGC CCGCTGTATTGAGTCACGCC
Downstream 100 bases:
>100_bases TCCGCCTGCCATTGGGTCTTCGCGCCAAAGTCGTTATTCTCTCACTGTTTTTGCTGTGCCTGCCCTGGCTTGGCTATCAA TATGTGTGGGAGATGGAAAA
Product: response regulator receiver protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MKRIAIVEDEAAIRENYKDVLQSHGYLVQTFANRPDAMLAFQTRLPDLAIIDIGLGDEIDGGFTLCQGLRALSPTIPIIF LTARDSDFDTVTGLRLGADDYLSKEVSFPHLLARLAALFRRCEQLKAPATPDNLLTRGHLTIDANRIQVYWRDLPIELTV TEFWMVHALARHPGHVKSRTELMQEAKIYVDDSTITSHVKRIRKKFIAADTEFDCIDTVYGMGYRWDSQSS
Sequences:
>Translated_231_residues MKRIAIVEDEAAIRENYKDVLQSHGYLVQTFANRPDAMLAFQTRLPDLAIIDIGLGDEIDGGFTLCQGLRALSPTIPIIF LTARDSDFDTVTGLRLGADDYLSKEVSFPHLLARLAALFRRCEQLKAPATPDNLLTRGHLTIDANRIQVYWRDLPIELTV TEFWMVHALARHPGHVKSRTELMQEAKIYVDDSTITSHVKRIRKKFIAADTEFDCIDTVYGMGYRWDSQSS >Mature_231_residues MKRIAIVEDEAAIRENYKDVLQSHGYLVQTFANRPDAMLAFQTRLPDLAIIDIGLGDEIDGGFTLCQGLRALSPTIPIIF LTARDSDFDTVTGLRLGADDYLSKEVSFPHLLARLAALFRRCEQLKAPATPDNLLTRGHLTIDANRIQVYWRDLPIELTV TEFWMVHALARHPGHVKSRTELMQEAKIYVDDSTITSHVKRIRKKFIAADTEFDCIDTVYGMGYRWDSQSS
Specific function: Member of a two-component regulatory system ChvG(ExoS)/ChvI involved in regulating the production of succinoglycan [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=35.3982300884956, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1788394, Length=234, Percent_Identity=35.4700854700855, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1786599, Length=233, Percent_Identity=32.618025751073, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787375, Length=230, Percent_Identity=33.0434782608696, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=30.7017543859649, Blast_Score=101, Evalue=3e-23, Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=33.0396475770925, Blast_Score=91, Evalue=4e-20, Organism=Escherichia coli, GI1786911, Length=231, Percent_Identity=31.6017316017316, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=30.3964757709251, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367329, Length=164, Percent_Identity=35.9756097560976, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=27.8260869565217, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=29.3333333333333, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=32.8947368421053, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI145693140, Length=234, Percent_Identity=31.1965811965812, Blast_Score=70, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 26183; Mature: 26183
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIAIVEDEAAIRENYKDVLQSHGYLVQTFANRPDAMLAFQTRLPDLAIIDIGLGDEID CCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCC GGFTLCQGLRALSPTIPIIFLTARDSDFDTVTGLRLGADDYLSKEVSFPHLLARLAALFR CHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCCEEECCHHHHHHCCCHHHHHHHHHHHHH RCEQLKAPATPDNLLTRGHLTIDANRIQVYWRDLPIELTVTEFWMVHALARHPGHVKSRT HHHHHCCCCCCHHHEECCEEEEECCEEEEEEECCCEEEEHHHHHHHHHHHHCCCCCHHHH ELMQEAKIYVDDSTITSHVKRIRKKFIAADTEFDCIDTVYGMGYRWDSQSS HHHHHCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKRIAIVEDEAAIRENYKDVLQSHGYLVQTFANRPDAMLAFQTRLPDLAIIDIGLGDEID CCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCC GGFTLCQGLRALSPTIPIIFLTARDSDFDTVTGLRLGADDYLSKEVSFPHLLARLAALFR CHHHHHHHHHHCCCCCCEEEEEECCCCCCHHCCEEECCHHHHHHCCCHHHHHHHHHHHHH RCEQLKAPATPDNLLTRGHLTIDANRIQVYWRDLPIELTVTEFWMVHALARHPGHVKSRT HHHHHCCCCCCHHHEECCEEEEECCEEEEEEECCCEEEEHHHHHHHHHHHHCCCCCHHHH ELMQEAKIYVDDSTITSHVKRIRKKFIAADTEFDCIDTVYGMGYRWDSQSS HHHHHCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7559334 [H]