| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775142
Identifier: 119775142
GI number: 119775142
Start: 2438680
End: 2439681
Strand: Direct
Name: 119775142
Synonym: Sama_2007
Alternate gene names: NA
Gene position: 2438680-2439681 (Clockwise)
Preceding gene: 119775141
Following gene: 119775143
Centisome position: 56.63
GC content: 53.39
Gene sequence:
>1002_bases ATGAAAAGTACGGACAAACACGCAGCCTCGCAGGTCGCCACTGTTACTCAGAAATCCTTCACGCAGGGGATGACGGCACT TATCTTAACTTCCGCACTCTCTGTGTTAGCCTTTTCAAGTAGCGTCCAAGCCACAGTTCAAAACGCGCAATTATCCCAGC AGCATGCTCCCTGCGTTGATAACAAATGGCCAAAATCTCGACTGTTAAGCCTTGCGGGAAGCCAGTTTGAGATGACGGAC GCCGACCGGAATGACATGGTGATGAGGTTAATAAGCTGCCTTGCAGACACAGATCCGGAGCTTCGAGACGCGGTTGCCTT CAGTGGATTAAGCCACTGGCTCAGAGCCAATGACCTTACAAATGAGACGGTAAAGAGCCTGTATACAAAGCTTTCCGGTG ATGTCCGCAAACGCAAAGATGACCCAAATGGCGTCTATCTTCCCTTTGCCATCCTGACCCTCTCGGAAGTGGCCAGAGTT GACAGGGTCAGCCCATTTTTTGAACCCGCTGAGCGGGACGCTCTCAGTAAGTTAGCTGCGGACACCATGGCAGGGATCCA GGATTATCGGGGCTTCGATGAGACGATTGGCTGGCGCCATCAGGTGGCTCACAGTGCAGATTTACTGCTGCAACTCGTCC TCAATCCGGCGTTGTCATCGGATGACATAATGGAGCTGGTTACATCGATACAGCATCAGCTCAGCCCCGCCGGGCATTTT TATGTATATGGTGAGCCGGAGCGCCTGGCCCGTCCGGTGCTTTACGCCATGCTAAGGGACGATATCCCTGATAGCTTTTG GCACAGTCAATTGGCCAGGTGGAGCACACCTGTCCATATCGAAGGCTGGGACAAGGCCTTTAGCTCCAATGCAGGGCTTG CTGAACGCCATAATCGCCGGGCATTTTTCAGTGCCCTGCTGCTTGGTATCTCAGGCAGCAAGCAGCCCAGATTGCTTGCG CTGCAGCCAGCAATTCAGGCCGCGATGAAAAAGCTGCCCTGA
Upstream 100 bases:
>100_bases TTAAACCTTGCCCTGTTCACACCACTCTTGTAGCGTCGGCATCGTAAACGATGGGGTATTCATCCGGACACAAACCTTAA GGGATTATCAGGGACGCATA
Downstream 100 bases:
>100_bases GACAACCGCTCGGTGCAGTATCTCAGTTTAATTTGGCCATCCATATGGTAAGATGGCCAAAATCTTATTCCAGGGGCAGG ACGCAGCATGTCAGATAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVDNKWPKSRLLSLAGSQFEMTD ADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLTNETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARV DRVSPFFEPAERDALSKLAADTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRRAFFSALLLGISGSKQPRLLA LQPAIQAAMKKLP
Sequences:
>Translated_333_residues MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVDNKWPKSRLLSLAGSQFEMTD ADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLTNETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARV DRVSPFFEPAERDALSKLAADTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRRAFFSALLLGISGSKQPRLLA LQPAIQAAMKKLP >Mature_333_residues MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVDNKWPKSRLLSLAGSQFEMTD ADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLTNETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARV DRVSPFFEPAERDALSKLAADTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRRAFFSALLLGISGSKQPRLLA LQPAIQAAMKKLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36862; Mature: 36862
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NKWPKSRLLSLAGSQFEMTDADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLT CCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC NETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARVDRVSPFFEPAERDALSKLAA HHHHHHHHHHHCCHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH DTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCE YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRR EEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHCCCCCHHHHHHHH AFFSALLLGISGSKQPRLLALQPAIQAAMKKLP HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCC >Mature Secondary Structure MKSTDKHAASQVATVTQKSFTQGMTALILTSALSVLAFSSSVQATVQNAQLSQQHAPCVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NKWPKSRLLSLAGSQFEMTDADRNDMVMRLISCLADTDPELRDAVAFSGLSHWLRANDLT CCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC NETVKSLYTKLSGDVRKRKDDPNGVYLPFAILTLSEVARVDRVSPFFEPAERDALSKLAA HHHHHHHHHHHCCHHHHCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH DTMAGIQDYRGFDETIGWRHQVAHSADLLLQLVLNPALSSDDIMELVTSIQHQLSPAGHF HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCE YVYGEPERLARPVLYAMLRDDIPDSFWHSQLARWSTPVHIEGWDKAFSSNAGLAERHNRR EEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHCCCCCHHHHHHHH AFFSALLLGISGSKQPRLLALQPAIQAAMKKLP HHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA