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The map label for this gene is ydaM [H]

Identifier: 119775136

GI number: 119775136

Start: 2430742

End: 2431785

Strand: Direct

Name: ydaM [H]

Synonym: Sama_2001

Alternate gene names: 119775136

Gene position: 2430742-2431785 (Clockwise)

Preceding gene: 119775135

Following gene: 119775140

Centisome position: 56.45

GC content: 55.46

Gene sequence:

>1044_bases
ATGGGCGAAAAGCCACCAGCCACCGCTGATCTCTTACAAACAGCTGCCGGGCGGTTGAAAAAAGCCGTTCCTTTGATGCT
TAAACATCAAATCCCCACCACTCCGATAAACTATGCCCTCTGGTACACCTATGTGGGCGAGCAACAACCCGAGCTCAACA
AAGCCCTGGACGACCTGGTGGCCCAGTACCACACACTGCCACCAGTCAGCGGCGAGCTCTTGTATCGCGAACATCTGGCC
GATCCGGTTGAGCTTGATGTGCGGGATATGCGCCAGAATCTCGAGGCCATGGCCACCGAGCTTGGCAACCAGCTGAAAGA
CACCAACCTGGATGCCACCGCATTTCAGCAAAAAATCGACGCTAACTTTTCACGATTGGAACGCATAGACAACGAGAGCC
TGAGTCTTGAACAGGTGCTGAATCTGGTGCGTACCCTAGTTAAAGAATCCGACGCCATCCGCGAGTCCACCAGCTACTTC
ACCGGCCAGCTCGCCAAGGCGCAGCAGGAAATCGATACACTCAAACGCCGGCTGGCCGAAAGTGAAAAAGATGTGTTTTT
CGATGCACTCACGGGCTGTCTCAATCGCCGTGCCTTTGATGCCGACCTTGCTGGTCTGCTGGCACTGGCACCTGAGGGTT
GTTGCCTTATCCTGTGTGATATCGACCATTTCAAGCACTTTAACGATAACTATGGCCACCAACTTGGCGATCAGGTACTG
AAGCTGGTGGGCAAACGCCTAACCGAAGCCTGCCGGGACGGCGTGAAGTGCTACCGTTACGGCGGTGAGGAGTTTGCCCT
GCTGGTCCCATCAAGCAATCTGCGCATCGCGCGCCAGTTGGCGGAAGGCATTCGCCGCGGCGTAGAAAAGCTGACCCTCA
AGGACAGACGCAGGGATGCCCGTATCGACAACATCAGCGCGTCGTTCGGTGTGGCCCAGTGGCAACCCAAAATGACCGCA
AGAAACCTGATTGAGCACTCCGACAAGCAGCTTTACGAAGCCAAACGCCTTGGACGCAACAGAGTCATGCCTATCTCAGG
CTGA

Upstream 100 bases:

>100_bases
AAACTGAGCTTTATCACCCTGCTGGAAACCTTCGGTTTAAACCCTCTGGATTCAGGGCTATCATAGCCCTATCGCTTCCT
CTATTTCATCGGAACAGTCC

Downstream 100 bases:

>100_bases
CCACCATGGCCTTTGCTGCCGTATCCGGGCGACTCCACAGGTCGTCCGGCTCGGCCACCACAACAAATCGCTCATTGGCT
CTGTCGCTTAAACCATAAAA

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MGEKPPATADLLQTAAGRLKKAVPLMLKHQIPTTPINYALWYTYVGEQQPELNKALDDLVAQYHTLPPVSGELLYREHLA
DPVELDVRDMRQNLEAMATELGNQLKDTNLDATAFQQKIDANFSRLERIDNESLSLEQVLNLVRTLVKESDAIRESTSYF
TGQLAKAQQEIDTLKRRLAESEKDVFFDALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVL
KLVGKRLTEACRDGVKCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDARIDNISASFGVAQWQPKMTA
RNLIEHSDKQLYEAKRLGRNRVMPISG

Sequences:

>Translated_347_residues
MGEKPPATADLLQTAAGRLKKAVPLMLKHQIPTTPINYALWYTYVGEQQPELNKALDDLVAQYHTLPPVSGELLYREHLA
DPVELDVRDMRQNLEAMATELGNQLKDTNLDATAFQQKIDANFSRLERIDNESLSLEQVLNLVRTLVKESDAIRESTSYF
TGQLAKAQQEIDTLKRRLAESEKDVFFDALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVL
KLVGKRLTEACRDGVKCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDARIDNISASFGVAQWQPKMTA
RNLIEHSDKQLYEAKRLGRNRVMPISG
>Mature_346_residues
GEKPPATADLLQTAAGRLKKAVPLMLKHQIPTTPINYALWYTYVGEQQPELNKALDDLVAQYHTLPPVSGELLYREHLAD
PVELDVRDMRQNLEAMATELGNQLKDTNLDATAFQQKIDANFSRLERIDNESLSLEQVLNLVRTLVKESDAIRESTSYFT
GQLAKAQQEIDTLKRRLAESEKDVFFDALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVLK
LVGKRLTEACRDGVKCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDARIDNISASFGVAQWQPKMTAR
NLIEHSDKQLYEAKRLGRNRVMPISG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=39.7727272727273, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787816, Length=199, Percent_Identity=34.1708542713568, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693134, Length=188, Percent_Identity=34.0425531914894, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=37.3417721518987, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=34.3195266272189, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=131, Percent_Identity=36.6412213740458, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=35.9756097560976, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=30.2469135802469, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=29.0909090909091, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=28.6516853932584, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=28.2608695652174, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=29.2993630573248, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 39151; Mature: 39020

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKPPATADLLQTAAGRLKKAVPLMLKHQIPTTPINYALWYTYVGEQQPELNKALDDLV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHH
AQYHTLPPVSGELLYREHLADPVELDVRDMRQNLEAMATELGNQLKDTNLDATAFQQKID
HHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ANFSRLERIDNESLSLEQVLNLVRTLVKESDAIRESTSYFTGQLAKAQQEIDTLKRRLAE
CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEKDVFFDALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCHHHHHHHHH
KLVGKRLTEACRDGVKCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDA
HHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
RIDNISASFGVAQWQPKMTARNLIEHSDKQLYEAKRLGRNRVMPISG
CHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GEKPPATADLLQTAAGRLKKAVPLMLKHQIPTTPINYALWYTYVGEQQPELNKALDDLV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHH
AQYHTLPPVSGELLYREHLADPVELDVRDMRQNLEAMATELGNQLKDTNLDATAFQQKID
HHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ANFSRLERIDNESLSLEQVLNLVRTLVKESDAIRESTSYFTGQLAKAQQEIDTLKRRLAE
CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEKDVFFDALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQLGDQVL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCHHHHHHHHH
KLVGKRLTEACRDGVKCYRYGGEEFALLVPSSNLRIARQLAEGIRRGVEKLTLKDRRRDA
HHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
RIDNISASFGVAQWQPKMTARNLIEHSDKQLYEAKRLGRNRVMPISG
CHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]