Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775135

Identifier: 119775135

GI number: 119775135

Start: 2429593

End: 2430453

Strand: Direct

Name: 119775135

Synonym: Sama_2000

Alternate gene names: NA

Gene position: 2429593-2430453 (Clockwise)

Preceding gene: 119775134

Following gene: 119775136

Centisome position: 56.42

GC content: 51.8

Gene sequence:

>861_bases
ATGCGGGCAACTTCGACCCTGTTGTTAATGGCATTGGCAGGATTTAGCCAGTGCGCGCTCGCCAAGGATATGACCCTTCG
GGTCGGTGGATTTTACTCTCAGTCTGATTCCAGCATAGACGTAACCGATCCTGTGATTGGTGAAGACTTTCGGCTGGATT
TCGAGAGCGACCTCCAGCTCGCCGAAAACCAGTTCCTGCCCTTTATCGAATTTGAATACGCCTTTGGCGACAGACACAAT
TTCTACCTGGATTGGAAACGTCTGCATCGCAGCGCCGAAACCAACGCCGTCACCCGCCCATTTGATGTACAAATCGACGA
TACAGTCTATTCCGTAAAGGCCGGTGGCCAACTCAATACCACACTGAATATTGATGTGCTGCGTCTTGGCTATGGTTACG
ACCTGCTACAAGGTGACAATTACAGCCTGGGCATTACCCTGGGATTACACACCATGTTCATCGAGTCGGTGTTTGAGGGT
GCAATTGGCGCCTGTCTTGCCACCGAGCTGGATGGCGATCTGTGCAGCCAGCGCCCTATTCCGAGGATTGTGGAAAACAG
CGTCACTGCCCCTCTGCCGGATATTGGCCTCATTGGTCATTACGAGTTTTTGCCCGGCTGGCGCTTCTCGGCCCATGGTC
AGTACTTCGCCATCAAACTCGATGATTTGGATGGCTCACTGACTGACATCCGCGCCGGTGTCAGTGCCGACCTCGGCGAG
AGCTGGAGCCTGTCACTGGCGTACAATTATTACAAAGTCGATGTGGATGTGACCCAGTCTGCTGAAAACATCAAAGTGGC
CGATTACAACATCTTCTACAAGTTTGTTGGCCCAATGATTTCGGTCAGTTATCGCTTTTAA

Upstream 100 bases:

>100_bases
CTTTGTGGTTAAACTGCAGGGCGGCAGAGGTGCATAGACACAGCCGTCCGGGTAACAGCTAACGACATAATAACGACAAA
GCAAGATTTCAGGAGCGACA

Downstream 100 bases:

>100_bases
GCGATTTCCAGTCCATTAAGGCCCTCAGGGGCCTTTTTTATTACCGCTTTCTCTCTTGATTACTGCAGTGCCCTGATTAT
TTAAGTGCCCTGATGTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRATSTLLLMALAGFSQCALAKDMTLRVGGFYSQSDSSIDVTDPVIGEDFRLDFESDLQLAENQFLPFIEFEYAFGDRHN
FYLDWKRLHRSAETNAVTRPFDVQIDDTVYSVKAGGQLNTTLNIDVLRLGYGYDLLQGDNYSLGITLGLHTMFIESVFEG
AIGACLATELDGDLCSQRPIPRIVENSVTAPLPDIGLIGHYEFLPGWRFSAHGQYFAIKLDDLDGSLTDIRAGVSADLGE
SWSLSLAYNYYKVDVDVTQSAENIKVADYNIFYKFVGPMISVSYRF

Sequences:

>Translated_286_residues
MRATSTLLLMALAGFSQCALAKDMTLRVGGFYSQSDSSIDVTDPVIGEDFRLDFESDLQLAENQFLPFIEFEYAFGDRHN
FYLDWKRLHRSAETNAVTRPFDVQIDDTVYSVKAGGQLNTTLNIDVLRLGYGYDLLQGDNYSLGITLGLHTMFIESVFEG
AIGACLATELDGDLCSQRPIPRIVENSVTAPLPDIGLIGHYEFLPGWRFSAHGQYFAIKLDDLDGSLTDIRAGVSADLGE
SWSLSLAYNYYKVDVDVTQSAENIKVADYNIFYKFVGPMISVSYRF
>Mature_286_residues
MRATSTLLLMALAGFSQCALAKDMTLRVGGFYSQSDSSIDVTDPVIGEDFRLDFESDLQLAENQFLPFIEFEYAFGDRHN
FYLDWKRLHRSAETNAVTRPFDVQIDDTVYSVKAGGQLNTTLNIDVLRLGYGYDLLQGDNYSLGITLGLHTMFIESVFEG
AIGACLATELDGDLCSQRPIPRIVENSVTAPLPDIGLIGHYEFLPGWRFSAHGQYFAIKLDDLDGSLTDIRAGVSADLGE
SWSLSLAYNYYKVDVDVTQSAENIKVADYNIFYKFVGPMISVSYRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31899; Mature: 31899

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRATSTLLLMALAGFSQCALAKDMTLRVGGFYSQSDSSIDVTDPVIGEDFRLDFESDLQL
CCCHHHHHHHHHHCCCHHHHCCCCEEEECCEECCCCCCEECCCCCCCCCEEECCHHCHHH
AENQFLPFIEFEYAFGDRHNFYLDWKRLHRSAETNAVTRPFDVQIDDTVYSVKAGGQLNT
HHHCCCCEEEEEEEECCCCEEEEEHHHHCCCCCCCCCCCCEEEEECCEEEEEECCCEEEE
TLNIDVLRLGYGYDLLQGDNYSLGITLGLHTMFIESVFEGAIGACLATELDGDLCSQRPI
EEEEEEEEEECCEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
PRIVENSVTAPLPDIGLIGHYEFLPGWRFSAHGQYFAIKLDDLDGSLTDIRAGVSADLGE
CHHHHCCCCCCCCCCCEEECEECCCCCEEECCCCEEEEEEECCCCCHHHHHCCCCCCCCC
SWSLSLAYNYYKVDVDVTQSAENIKVADYNIFYKFVGPMISVSYRF
CEEEEEEEEEEEEEEEEECCCCCEEEEEHEEEEEECCCEEEEEECC
>Mature Secondary Structure
MRATSTLLLMALAGFSQCALAKDMTLRVGGFYSQSDSSIDVTDPVIGEDFRLDFESDLQL
CCCHHHHHHHHHHCCCHHHHCCCCEEEECCEECCCCCCEECCCCCCCCCEEECCHHCHHH
AENQFLPFIEFEYAFGDRHNFYLDWKRLHRSAETNAVTRPFDVQIDDTVYSVKAGGQLNT
HHHCCCCEEEEEEEECCCCEEEEEHHHHCCCCCCCCCCCCEEEEECCEEEEEECCCEEEE
TLNIDVLRLGYGYDLLQGDNYSLGITLGLHTMFIESVFEGAIGACLATELDGDLCSQRPI
EEEEEEEEEECCEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
PRIVENSVTAPLPDIGLIGHYEFLPGWRFSAHGQYFAIKLDDLDGSLTDIRAGVSADLGE
CHHHHCCCCCCCCCCCEEECEECCCCCEEECCCCEEEEEEECCCCCHHHHHCCCCCCCCC
SWSLSLAYNYYKVDVDVTQSAENIKVADYNIFYKFVGPMISVSYRF
CEEEEEEEEEEEEEEEEECCCCCEEEEEHEEEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA