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The map label for this gene is yebC [C]

Identifier: 119774977

GI number: 119774977

Start: 2242508

End: 2243254

Strand: Reverse

Name: yebC [C]

Synonym: Sama_1842

Alternate gene names: 119774977

Gene position: 2243254-2242508 (Counterclockwise)

Preceding gene: 119774978

Following gene: 119774976

Centisome position: 52.09

GC content: 57.56

Gene sequence:

>747_bases
ATGGCAGGTCACAGCAAGTGGGCCAACATCAGGCACCGTAAAGCCGCCCAGGATGCCAAGCGCGGCAAACTCTTTACCAA
ACTCATTCGCGAGCTGGTTGTCTCCGCCCGTGAGGGTGGTTCAGATGCCGATGCCAACCCCCGTCTGCGTGCTGCCATCG
ATAAAGCCCTGTCTGCCAATATGACCCGTGACACTGTGGAACGCGCGGTTAAACGCGGCTCGGGTGAACTTGATGGCGAC
AACCTGGAAACCCTCATCTACGAAGGCTACGGCCCCGGCGGCACTGCTGTGATGGTCGAGTGCATGACGGATAATCGCAA
CCGGGCGGTGACCGGGGTGCGCAATGCCTTCAATAAGTCCGGCGGCAACCTGGGCACAGATGGCTCGGTGGCGTATCTCT
TTACCAAACGTGGGGTGATAAGTTTCGAGGCCGGCACAGATGAAGACGCCATGATGGAAGCTGCGCTCGATGCCGGCGCC
GATGATGTCATCATCAATGATGATGGCAGTGCCGATGTGTACACTACGCCTGAGGACTTTGGCGCCGTGAAAGATGCCCT
CGATGGCACCGGTTTTTCCTCGGTGAACGCCGAAGTGACCATGGTGCCATCCACACGGGCCGTGCTTGATGCCGAAACCG
CTCCCAAATTCCTGCGGCTTATCGATCAGCTTGAAGATCATGATGATGTGCAGGAGGTTTACCATAACGCCGACATCCCC
GATGAGGTGATGGAGACGCTGGAATAA

Upstream 100 bases:

>100_bases
GCATGCCTCGGTCTGTTTTTACGGCCACTGCATTTTCCCCGGACGCTGTTTTTCGTTAGTCTGGACACTGGTCATCTATC
CGCATTTCAAGGAGATTTCT

Downstream 100 bases:

>100_bases
TCCATGGCCATTATTTTAGGAGTCGACCCGGGCTCACGCATCACAGGTTATGGGGTTATCCAGTGTCAGGGCAGGCATCA
GCTCTATCTTGGCAGCGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MAGHSKWANIRHRKAAQDAKRGKLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSANMTRDTVERAVKRGSGELDGD
NLETLIYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFNKSGGNLGTDGSVAYLFTKRGVISFEAGTDEDAMMEAALDAGA
DDVIINDDGSADVYTTPEDFGAVKDALDGTGFSSVNAEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNADIP
DEVMETLE

Sequences:

>Translated_248_residues
MAGHSKWANIRHRKAAQDAKRGKLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSANMTRDTVERAVKRGSGELDGD
NLETLIYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFNKSGGNLGTDGSVAYLFTKRGVISFEAGTDEDAMMEAALDAGA
DDVIINDDGSADVYTTPEDFGAVKDALDGTGFSSVNAEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNADIP
DEVMETLE
>Mature_247_residues
AGHSKWANIRHRKAAQDAKRGKLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSANMTRDTVERAVKRGSGELDGDN
LETLIYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFNKSGGNLGTDGSVAYLFTKRGVISFEAGTDEDAMMEAALDAGAD
DVIINDDGSADVYTTPEDFGAVKDALDGTGFSSVNAEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNADIPD
EVMETLE

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family [H]

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=29.1497975708502, Blast_Score=125, Evalue=4e-29,
Organism=Escherichia coli, GI1788171, Length=247, Percent_Identity=70.4453441295547, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1788294, Length=237, Percent_Identity=37.9746835443038, Blast_Score=154, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI17556100, Length=249, Percent_Identity=25.3012048192771, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=29.5454545454545, Blast_Score=115, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24583305, Length=251, Percent_Identity=27.4900398406374, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002876
- InterPro:   IPR017856 [H]

Pfam domain/function: PF01709 DUF28 [H]

EC number: NA

Molecular weight: Translated: 26633; Mature: 26502

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIRHRKAAQDAKRGKLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
MTRDTVERAVKRGSGELDGDNLETLIYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFNKS
CCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC
GGNLGTDGSVAYLFTKRGVISFEAGTDEDAMMEAALDAGADDVIINDDGSADVYTTPEDF
CCCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCEEECHHHH
GAVKDALDGTGFSSVNAEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNADIP
HHHHHHHCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
DEVMETLE
HHHHHHCC
>Mature Secondary Structure 
AGHSKWANIRHRKAAQDAKRGKLFTKLIRELVVSAREGGSDADANPRLRAAIDKALSAN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
MTRDTVERAVKRGSGELDGDNLETLIYEGYGPGGTAVMVECMTDNRNRAVTGVRNAFNKS
CCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC
GGNLGTDGSVAYLFTKRGVISFEAGTDEDAMMEAALDAGADDVIINDDGSADVYTTPEDF
CCCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCEEECHHHH
GAVKDALDGTGFSSVNAEVTMVPSTRAVLDAETAPKFLRLIDQLEDHDDVQEVYHNADIP
HHHHHHHCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
DEVMETLE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]