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The map label for this gene is ydhB [H]

Identifier: 119774918

GI number: 119774918

Start: 2174802

End: 2175704

Strand: Reverse

Name: ydhB [H]

Synonym: Sama_1783

Alternate gene names: 119774918

Gene position: 2175704-2174802 (Counterclockwise)

Preceding gene: 119774920

Following gene: 119774917

Centisome position: 50.53

GC content: 52.6

Gene sequence:

>903_bases
ATGCTGTCGGAACAATCGCTGGAGTTGGTCGATATCGTTGCTCAGGTCGGTAGTTTTACCGCTGCAGCGGCAAAGTTGCA
CAAGGTGCCTTCCGCGGTCAGCTATGCAATCAAGCAAATCGAAGACGAATTGGGTGTGGTACTGTTTAACCGCCATCACC
GTAGCGTGAGTCTGACGGTAGCCGGTGAGCACTTCGTCCGTGAAGCCCGCGCCATGCTATCGCAAATGGATGAACTCAAG
CGCGGAACACAGCGTATTGCCAATGGCTGGCAACCAACCCTGTCCATCGCGCTGGACAACATTGTCCGAGCAGACAAGAT
AAGCGTGTTAATCGCTGATTTTTACAGGCATTTTCAGGATGTCGAGTTAATCATACGCATCGAAGTATTCAACGGTGTAT
GGGAAGCACTTGCTACAGGACGCAGCCACATTGCCATTGGCGCTACAACGGCCATTCCCGTTGGTGGCGTATTCCAATAC
CGGGACATGGGGGTTATCGACTGGGCGTTTTTGGTGTCTAAAAATCACCCTCTTGCGTCCATAGAGGCACCGTTAAGCGA
TGATATGCTAAGGCCATTCCCCTCCATTTGTCTTGAAGATACATCGCGGGAAATTCCCAAACGTACGACCTGGCTTTTGG
ACAATCAACGTCGGCTGGTTGTGCCGGACTGGATCCGTGCCATTAACTGTTTCACCAACGGCTTGGGAATAGGTTACATG
CCAAGACACCTTGCGGCGCCCTTTATTCAGGCCGGATTGTTGATGGAAAAAACACTTGAGCAGCCAAAGGCGCCCAGTCC
TTGCTGTCTGGCGTGGAACGGTGATGCGCCCTCGCCTGCACTCAGTTGGGTGCTTGATTACCTCGGCGACAGTGAAAAGC
TGCACCGCGAATGGCTGGCATAA

Upstream 100 bases:

>100_bases
AGTCTAATAACTTGTTTTACCGCTGTGAAACGGTTAATTTTGCATACTGTAACCAAAATAATTCATGGCAAAGTGCCCTT
CTTACATCAGGAAATTCACC

Downstream 100 bases:

>100_bases
GTGTGGTTTCCGCCGGGAATTCAGTTATGATAGCCAAGATAGTCATACATTAAGGAGACATTGAAATGTCACAGGAAATT
CTGGTTTCCAAGCAGTCGAC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLSEQSLELVDIVAQVGSFTAAAAKLHKVPSAVSYAIKQIEDELGVVLFNRHHRSVSLTVAGEHFVREARAMLSQMDELK
RGTQRIANGWQPTLSIALDNIVRADKISVLIADFYRHFQDVELIIRIEVFNGVWEALATGRSHIAIGATTAIPVGGVFQY
RDMGVIDWAFLVSKNHPLASIEAPLSDDMLRPFPSICLEDTSREIPKRTTWLLDNQRRLVVPDWIRAINCFTNGLGIGYM
PRHLAAPFIQAGLLMEKTLEQPKAPSPCCLAWNGDAPSPALSWVLDYLGDSEKLHREWLA

Sequences:

>Translated_300_residues
MLSEQSLELVDIVAQVGSFTAAAAKLHKVPSAVSYAIKQIEDELGVVLFNRHHRSVSLTVAGEHFVREARAMLSQMDELK
RGTQRIANGWQPTLSIALDNIVRADKISVLIADFYRHFQDVELIIRIEVFNGVWEALATGRSHIAIGATTAIPVGGVFQY
RDMGVIDWAFLVSKNHPLASIEAPLSDDMLRPFPSICLEDTSREIPKRTTWLLDNQRRLVVPDWIRAINCFTNGLGIGYM
PRHLAAPFIQAGLLMEKTLEQPKAPSPCCLAWNGDAPSPALSWVLDYLGDSEKLHREWLA
>Mature_300_residues
MLSEQSLELVDIVAQVGSFTAAAAKLHKVPSAVSYAIKQIEDELGVVLFNRHHRSVSLTVAGEHFVREARAMLSQMDELK
RGTQRIANGWQPTLSIALDNIVRADKISVLIADFYRHFQDVELIIRIEVFNGVWEALATGRSHIAIGATTAIPVGGVFQY
RDMGVIDWAFLVSKNHPLASIEAPLSDDMLRPFPSICLEDTSREIPKRTTWLLDNQRRLVVPDWIRAINCFTNGLGIGYM
PRHLAAPFIQAGLLMEKTLEQPKAPSPCCLAWNGDAPSPALSWVLDYLGDSEKLHREWLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=54.5150501672241, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=32.9824561403509, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=32.967032967033, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=31.4079422382672, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1789492, Length=286, Percent_Identity=30.7692307692308, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787806, Length=160, Percent_Identity=28.75, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=167, Percent_Identity=31.1377245508982, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33432; Mature: 33432

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSEQSLELVDIVAQVGSFTAAAAKLHKVPSAVSYAIKQIEDELGVVLFNRHHRSVSLTV
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
AGEHFVREARAMLSQMDELKRGTQRIANGWQPTLSIALDNIVRADKISVLIADFYRHFQD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VELIIRIEVFNGVWEALATGRSHIAIGATTAIPVGGVFQYRDMGVIDWAFLVSKNHPLAS
EEEEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEE
IEAPLSDDMLRPFPSICLEDTSREIPKRTTWLLDNQRRLVVPDWIRAINCFTNGLGIGYM
ECCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCEEECHHHHHHHHHHHCCCCCCCC
PRHLAAPFIQAGLLMEKTLEQPKAPSPCCLAWNGDAPSPALSWVLDYLGDSEKLHREWLA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MLSEQSLELVDIVAQVGSFTAAAAKLHKVPSAVSYAIKQIEDELGVVLFNRHHRSVSLTV
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
AGEHFVREARAMLSQMDELKRGTQRIANGWQPTLSIALDNIVRADKISVLIADFYRHFQD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VELIIRIEVFNGVWEALATGRSHIAIGATTAIPVGGVFQYRDMGVIDWAFLVSKNHPLAS
EEEEEEEEHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHCCCCCCEE
IEAPLSDDMLRPFPSICLEDTSREIPKRTTWLLDNQRRLVVPDWIRAINCFTNGLGIGYM
ECCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCEEECHHHHHHHHHHHCCCCCCCC
PRHLAAPFIQAGLLMEKTLEQPKAPSPCCLAWNGDAPSPALSWVLDYLGDSEKLHREWLA
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]