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The map label for this gene is yccA [C]

Identifier: 119774917

GI number: 119774917

Start: 2174080

End: 2174736

Strand: Reverse

Name: yccA [C]

Synonym: Sama_1782

Alternate gene names: 119774917

Gene position: 2174736-2174080 (Counterclockwise)

Preceding gene: 119774918

Following gene: 119774916

Centisome position: 50.5

GC content: 48.4

Gene sequence:

>657_bases
ATGTCACAGGAAATTCTGGTTTCCAAGCAGTCGACACTGGAAGTCAACAAGCTCATCAAAAACACCTATATGTTGCTTTC
CATGACACTGGCATTTTCAGCGCTGTGCGCCTGGATTGCCACGGCGATGGGCATTTCGCCTTTGATGTCTCTGGGTTTTG
CCATCGGCGGATTCATTCTGCTGTTTGTCACCCTGCGTAAAGCCGACACCGCAGCAGGTCTGTTTTGGGTATTTGCCTTT
ACTGGTATGGAAGGCGCTTCACTCGGTTTTATCCTGAACCACTATGCGGGCATGGCCAATGGCCCTGAACTTATCATGCA
AGCATTCGGCCTCACGTCAGCCATTTTTATCGGCTTGTCCATGTATGCCCTCACCACTAAAAAAGACTTCTCTTTTATGG
GTGGCTTTTTGTTCGCCGGTTTAATTGTGATTGTGATTGGTGGCCTGATTAATTTGTTCGTTGGCAACAGCACCGCGTAC
ATGCTGCTGTCCTGGGCAACCGCTTTGGTGTTTACCGGTCTTATTCTGTTTGATACCAGTCGCATCGTAAACGGCGGCGA
AACCAACTATATTCGCGCCACTGTGTCGCTGTATCTGGACTTCCTCAATTTGTTCCTCGCTATTTTGCGCATTCTTGGCA
TGAACAACGACGATTAA

Upstream 100 bases:

>100_bases
ACAGTGAAAAGCTGCACCGCGAATGGCTGGCATAAGTGTGGTTTCCGCCGGGAATTCAGTTATGATAGCCAAGATAGTCA
TACATTAAGGAGACATTGAA

Downstream 100 bases:

>100_bases
ACATTCCACAGAGTTAAGGTAAAATGGCCCACTTCGAGGGCCATTTTTTTATTATGAGCACATTTATTCTTCAGGTATCA
GGTAAAGCCTATGGTAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSQEILVSKQSTLEVNKLIKNTYMLLSMTLAFSALCAWIATAMGISPLMSLGFAIGGFILLFVTLRKADTAAGLFWVFAF
TGMEGASLGFILNHYAGMANGPELIMQAFGLTSAIFIGLSMYALTTKKDFSFMGGFLFAGLIVIVIGGLINLFVGNSTAY
MLLSWATALVFTGLILFDTSRIVNGGETNYIRATVSLYLDFLNLFLAILRILGMNNDD

Sequences:

>Translated_218_residues
MSQEILVSKQSTLEVNKLIKNTYMLLSMTLAFSALCAWIATAMGISPLMSLGFAIGGFILLFVTLRKADTAAGLFWVFAF
TGMEGASLGFILNHYAGMANGPELIMQAFGLTSAIFIGLSMYALTTKKDFSFMGGFLFAGLIVIVIGGLINLFVGNSTAY
MLLSWATALVFTGLILFDTSRIVNGGETNYIRATVSLYLDFLNLFLAILRILGMNNDD
>Mature_217_residues
SQEILVSKQSTLEVNKLIKNTYMLLSMTLAFSALCAWIATAMGISPLMSLGFAIGGFILLFVTLRKADTAAGLFWVFAFT
GMEGASLGFILNHYAGMANGPELIMQAFGLTSAIFIGLSMYALTTKKDFSFMGGFLFAGLIVIVIGGLINLFVGNSTAYM
LLSWATALVFTGLILFDTSRIVNGGETNYIRATVSLYLDFLNLFLAILRILGMNNDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Homo sapiens, GI116812579, Length=182, Percent_Identity=34.6153846153846, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1787205, Length=213, Percent_Identity=44.6009389671362, Blast_Score=156, Evalue=8e-40,
Organism=Escherichia coli, GI1787004, Length=120, Percent_Identity=36.6666666666667, Blast_Score=70, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24653221, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24653223, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI45551091, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17647735, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24653225, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24653227, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24646768, Length=153, Percent_Identity=31.3725490196078, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI19922136, Length=157, Percent_Identity=33.1210191082803, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24653219, Length=157, Percent_Identity=33.1210191082803, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23575; Mature: 23444

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQEILVSKQSTLEVNKLIKNTYMLLSMTLAFSALCAWIATAMGISPLMSLGFAIGGFIL
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVTLRKADTAAGLFWVFAFTGMEGASLGFILNHYAGMANGPELIMQAFGLTSAIFIGLS
HHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
MYALTTKKDFSFMGGFLFAGLIVIVIGGLINLFVGNSTAYMLLSWATALVFTGLILFDTS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RIVNGGETNYIRATVSLYLDFLNLFLAILRILGMNNDD
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SQEILVSKQSTLEVNKLIKNTYMLLSMTLAFSALCAWIATAMGISPLMSLGFAIGGFIL
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVTLRKADTAAGLFWVFAFTGMEGASLGFILNHYAGMANGPELIMQAFGLTSAIFIGLS
HHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
MYALTTKKDFSFMGGFLFAGLIVIVIGGLINLFVGNSTAYMLLSWATALVFTGLILFDTS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RIVNGGETNYIRATVSLYLDFLNLFLAILRILGMNNDD
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]