| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is eptA [H]
Identifier: 119774893
GI number: 119774893
Start: 2150332
End: 2151948
Strand: Direct
Name: eptA [H]
Synonym: Sama_1758
Alternate gene names: 119774893
Gene position: 2150332-2151948 (Clockwise)
Preceding gene: 119774892
Following gene: 119774894
Centisome position: 49.94
GC content: 47.74
Gene sequence:
>1617_bases TTGAAGTCCATTGGTTTGAATCGGTTCACTTTTTTTATAGCCCTGTATTACGCAGCGATCCTGAACATTCCCCTGTATAT CAGGGCGGCAGAAGGGCTGAAGTCATTGTCACACATCGATTGGTTGTTTGTAGCAAGCTTACCTGTACTGCTGACATCCT TACTGGCACTCATCTTCTCGCTTTTCAGTGTTAAGTACCTCGTAAAACCTTTTTTTATCCTGCTGACGTTGGTTTCGGCG TTGGTCGTCTTTGGCATGTATAAATACGGTATCGTGTTTGACCGTGCCATGATGGAAAACATCTTTGAAACCCACAGCGC CGAAGCGTTCATGTATCTCAATACAGAGTCCGTGGTTGGCTTTTTACTGCTTGGGATACTGCCGGCGTTTCTTATTGCCA AAGTTAAAATTGAATATCGGGTCTGGTGGAAAGAGCTGCTGGTTAAGTCTGGCTTCATGCTGGGAATGGTATCGATTGCC GGTGGTGTGCTTGCCGGTTACTACCAGGACTATGTCGCCTTTGGGCGAAATAATGATGATATGAAACAACTGGTTGTACC TACCTATTACATAGGCGCGGCGGCAGGGTTCGTGAATCAGCGTTATATTGAAACGCCGTTGGAATATCAGCCCCTTGGGA CAGATGCCAACAACCAAACCCGGGACAGCAATCAAAAACCCCTGTTAACCGTGCTGTTGGTCGGGGAAACCGCCCGTTCA ATGAATTATCAGTATTATGGCTATCAAAAAGATACCAATGCGTTTACCAAGCCCCACAATCCCATTGTACTGAGCGCGAC CCGGTCATGTGGTACCGCAACAGCACAATCCTTACCCTGTATGTTCTCCCGTATGGGCAGGGAAGACTACAATGCGAGAA AAGCCAGAGCCCAGGATACCGTAATCGATGTACTCGATCATGCCGGTGTGACTGTGTATTGGATTGATAGTGACAGTGGT TGTAAGGGTGTTTGTGATCGGGTAATCAACGAAACAGTCAAGCTGGATGAGGATCCCGCTCTGTGTGATGGCGAGTCTTG TCTGGATCAAGTCCTTTTGAATCGTCTCGATAACATACTGGCGAGTCCCATTGAAAAAGACACCCTATTGGTGCTGCATA TTATGGGCAGCCATGGACCTACGTACTTCCAGCGCTATCCGGACGAACATAAAGCCTTCACGCCAGATTGCCCACGCAGT GATATTCAAAACTGCAGTAACGAGGCGCTCGTAAATACCTACGACAACACCATCCGTTACAGTGACTACATCATGGCGGA GGTGATTAATAGACTGAAACAGCAAGAGCCAGTGGCCGATACTGCGATGATGTATATCTCAGATCATGGAGAGTCTCTGG GCGAAAAGGGCTTGTACCTGCATGGTGCGCCCTATGCATTTGCACCCATCGAGCAAATCAGTGTGCCCTGGCTGTTGTGG CTATCTGACGGTTTTAAAGAAGAAAACCGCCTGGATGAAAGCTGTTTAAGGAGCTTGCAGGGCGAATGGTCCCATGACAA TCTATTTGATAGCTTGTTGGGGTGGATGAATATTCACACCAGCATATATCGCAAGGAGCTGGATATTTTCAGTCGCTGTC GACTTCCGGCGGTATAA
Upstream 100 bases:
>100_bases ATTGGGCATTTGCCCTATAGACTGAGACTTTTGTTTTATTTTCTAATGCCACGTTTACAATAAGCATACTTTTAAAGGGC TTTTTTGGGGGAAAGTTAGT
Downstream 100 bases:
>100_bases CCAGCGCAATTAGCGTGACTTAACCCAAGATTCAGGCAAACCCCGTGGTCAACGAGCCACGGGCAGTTAAGGATGAAGTA TTTGCCATGACACTCGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Polymyxin resistance protein pmrC [H]
Number of amino acids: Translated: 538; Mature: 538
Protein sequence:
>538_residues MKSIGLNRFTFFIALYYAAILNIPLYIRAAEGLKSLSHIDWLFVASLPVLLTSLLALIFSLFSVKYLVKPFFILLTLVSA LVVFGMYKYGIVFDRAMMENIFETHSAEAFMYLNTESVVGFLLLGILPAFLIAKVKIEYRVWWKELLVKSGFMLGMVSIA GGVLAGYYQDYVAFGRNNDDMKQLVVPTYYIGAAAGFVNQRYIETPLEYQPLGTDANNQTRDSNQKPLLTVLLVGETARS MNYQYYGYQKDTNAFTKPHNPIVLSATRSCGTATAQSLPCMFSRMGREDYNARKARAQDTVIDVLDHAGVTVYWIDSDSG CKGVCDRVINETVKLDEDPALCDGESCLDQVLLNRLDNILASPIEKDTLLVLHIMGSHGPTYFQRYPDEHKAFTPDCPRS DIQNCSNEALVNTYDNTIRYSDYIMAEVINRLKQQEPVADTAMMYISDHGESLGEKGLYLHGAPYAFAPIEQISVPWLLW LSDGFKEENRLDESCLRSLQGEWSHDNLFDSLLGWMNIHTSIYRKELDIFSRCRLPAV
Sequences:
>Translated_538_residues MKSIGLNRFTFFIALYYAAILNIPLYIRAAEGLKSLSHIDWLFVASLPVLLTSLLALIFSLFSVKYLVKPFFILLTLVSA LVVFGMYKYGIVFDRAMMENIFETHSAEAFMYLNTESVVGFLLLGILPAFLIAKVKIEYRVWWKELLVKSGFMLGMVSIA GGVLAGYYQDYVAFGRNNDDMKQLVVPTYYIGAAAGFVNQRYIETPLEYQPLGTDANNQTRDSNQKPLLTVLLVGETARS MNYQYYGYQKDTNAFTKPHNPIVLSATRSCGTATAQSLPCMFSRMGREDYNARKARAQDTVIDVLDHAGVTVYWIDSDSG CKGVCDRVINETVKLDEDPALCDGESCLDQVLLNRLDNILASPIEKDTLLVLHIMGSHGPTYFQRYPDEHKAFTPDCPRS DIQNCSNEALVNTYDNTIRYSDYIMAEVINRLKQQEPVADTAMMYISDHGESLGEKGLYLHGAPYAFAPIEQISVPWLLW LSDGFKEENRLDESCLRSLQGEWSHDNLFDSLLGWMNIHTSIYRKELDIFSRCRLPAV >Mature_538_residues MKSIGLNRFTFFIALYYAAILNIPLYIRAAEGLKSLSHIDWLFVASLPVLLTSLLALIFSLFSVKYLVKPFFILLTLVSA LVVFGMYKYGIVFDRAMMENIFETHSAEAFMYLNTESVVGFLLLGILPAFLIAKVKIEYRVWWKELLVKSGFMLGMVSIA GGVLAGYYQDYVAFGRNNDDMKQLVVPTYYIGAAAGFVNQRYIETPLEYQPLGTDANNQTRDSNQKPLLTVLLVGETARS MNYQYYGYQKDTNAFTKPHNPIVLSATRSCGTATAQSLPCMFSRMGREDYNARKARAQDTVIDVLDHAGVTVYWIDSDSG CKGVCDRVINETVKLDEDPALCDGESCLDQVLLNRLDNILASPIEKDTLLVLHIMGSHGPTYFQRYPDEHKAFTPDCPRS DIQNCSNEALVNTYDNTIRYSDYIMAEVINRLKQQEPVADTAMMYISDHGESLGEKGLYLHGAPYAFAPIEQISVPWLLW LSDGFKEENRLDESCLRSLQGEWSHDNLFDSLLGWMNIHTSIYRKELDIFSRCRLPAV
Specific function: Catalyzes the addition of a phosphoethanolamine moiety to the lipid A. The phosphoethanolamine modification is required for resistance to polymyxin [H]
COG id: COG2194
COG function: function code R; Predicted membrane-associated, metal-dependent hydrolase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoethanolamine transferase family. EptA subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082372, Length=525, Percent_Identity=38.0952380952381, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI87082286, Length=298, Percent_Identity=27.8523489932886, Blast_Score=131, Evalue=1e-31, Organism=Escherichia coli, GI87082223, Length=447, Percent_Identity=22.5950782997763, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012549 - InterPro: IPR000917 [H]
Pfam domain/function: PF08019 DUF1705; PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 60833; Mature: 60833
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIGLNRFTFFIALYYAAILNIPLYIRAAEGLKSLSHIDWLFVASLPVLLTSLLALIFS CCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFSVKYLVKPFFILLTLVSALVVFGMYKYGIVFDRAMMENIFETHSAEAFMYLNTESVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHH FLLLGILPAFLIAKVKIEYRVWWKELLVKSGFMLGMVSIAGGVLAGYYQDYVAFGRNNDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH MKQLVVPTYYIGAAAGFVNQRYIETPLEYQPLGTDANNQTRDSNQKPLLTVLLVGETARS HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHH MNYQYYGYQKDTNAFTKPHNPIVLSATRSCGTATAQSLPCMFSRMGREDYNARKARAQDT CCCEEECEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH VIDVLDHAGVTVYWIDSDSGCKGVCDRVINETVKLDEDPALCDGESCLDQVLLNRLDNIL HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH ASPIEKDTLLVLHIMGSHGPTYFQRYPDEHKAFTPDCPRSDIQNCSNEALVNTYDNTIRY HCCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEH SDYIMAEVINRLKQQEPVADTAMMYISDHGESLGEKGLYLHGAPYAFAPIEQISVPWLLW HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCHHHCCCCEEEE LSDGFKEENRLDESCLRSLQGEWSHDNLFDSLLGWMNIHTSIYRKELDIFSRCRLPAV ECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKSIGLNRFTFFIALYYAAILNIPLYIRAAEGLKSLSHIDWLFVASLPVLLTSLLALIFS CCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFSVKYLVKPFFILLTLVSALVVFGMYKYGIVFDRAMMENIFETHSAEAFMYLNTESVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHH FLLLGILPAFLIAKVKIEYRVWWKELLVKSGFMLGMVSIAGGVLAGYYQDYVAFGRNNDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH MKQLVVPTYYIGAAAGFVNQRYIETPLEYQPLGTDANNQTRDSNQKPLLTVLLVGETARS HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHH MNYQYYGYQKDTNAFTKPHNPIVLSATRSCGTATAQSLPCMFSRMGREDYNARKARAQDT CCCEEECEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH VIDVLDHAGVTVYWIDSDSGCKGVCDRVINETVKLDEDPALCDGESCLDQVLLNRLDNIL HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH ASPIEKDTLLVLHIMGSHGPTYFQRYPDEHKAFTPDCPRSDIQNCSNEALVNTYDNTIRY HCCCCCCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEH SDYIMAEVINRLKQQEPVADTAMMYISDHGESLGEKGLYLHGAPYAFAPIEQISVPWLLW HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCHHHCCCCEEEE LSDGFKEENRLDESCLRSLQGEWSHDNLFDSLLGWMNIHTSIYRKELDIFSRCRLPAV ECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 8282725 [H]