| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774836
Identifier: 119774836
GI number: 119774836
Start: 2080955
End: 2082121
Strand: Reverse
Name: 119774836
Synonym: Sama_1700
Alternate gene names: NA
Gene position: 2082121-2080955 (Counterclockwise)
Preceding gene: 119774837
Following gene: 119774835
Centisome position: 48.35
GC content: 51.67
Gene sequence:
>1167_bases ATGACCAGTCCTAAATCCAGCCACTGGGACATCTTTTGTGCCGTTGTCGATAACTACGGTGATATTGGCGTTACCTGGCG CCTCTCAAAACAATTGGCACGGGAATATCAGCTGCCCATAGTGCTTTGGGTGGATGACCTCAAAAGCTTTGCGCATATAT TGCCCACGCTTAACCCAACCCTTGGCTCGCAAACCCTCGAAGGCGTCACCATCAATCAGTGGAATATGCCGCTGAACATC GATTACACCCCAGGCGCCGTGCTGATTGAAGCCTTCGCCTGTGAATTACCTGACGAGGTCAAGGCCATAGCAAAATGCGC GCCCACACCACCGCTTTGGCTCAATCTTGAGTACCTGAGCGCAGAAGACTGGGTCGACGGTTGCCATGGGCTGCCCTCAT TACAAAGCGGCGGCATCAACAAATACTTTTATATGCCCGGTTTTTCTGCCGCGAGCGGTGGTCTGATTTGCGAAAAGTCT CTCTTTGATGAAAGGGATGCCTGGCAGGCCGACAGTGCCAACAAGCTCACTCTTTTTAGAAGCCTGGGGCTGAGTGGCAT CAAAGCGGATGACAAGATCGTCAGTCTCTTCAGCTATGAAACCCTGGCACTGGAGGGCCTCTGTGCCCGTTGGCAAGCCT CATCGAGCCCAGTGCATCTGCTGGTGCCCAAGGGACGCAGCCTGAACAGTTTGGCATCGTATCTGCCCAAAGCCCCTGCC GATATCGCAGCTGGTGAGCAGTTTTGTCAGGGTGCTCTTACCATCCACATACTGCCGATGACAGATCAAACCGGCTATGA TCGCCTGCTTTGGAGCGCCGATTTTAACATCATACGGGGCGAAGACTCCTTTTTACGGGCACAATGGGCGGGCCGTCCCT TTATTTGGCACATTTACCAGCAGGAAGAAGACTACCACCTGGTAAAATTAGAAGCTTTTATGCGCCTTTACTGCGATAAT CTGGCACCTGAGATTGCAGATTGCTGGAAAAACTTGAACCTTGCGTTCAATCAGCAACAGGCGGATGCCGTGCAGCAGCA CTGGCAAAATATCGAATCTTTCGCTTTGCCTTTGTTGGCACACGCCAAACAATGGCCAATCGATGCACTTAAGACGACAG ATCTGGCAACCAGGCTAGTGCAATTCGTCAAAAAATCGTTAAGATAG
Upstream 100 bases:
>100_bases TCTGGCCGAGTTGGCAGACTGATTTCTTGAAGTTTGAAAAGGCGGCGTTTACGCCGCTTTTTTCATTTCCGCGCCAACCG AATTCGGGTCTCAAGCGTCT
Downstream 100 bases:
>100_bases CGCCTTAAAGTTAAACGTCCAAGATATAGGAAATTAGTAATGAAAACTGCTCATGAAATCCGTCCCGGTAACGTGATCAT GTTTAACGACAGCCCATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MTSPKSSHWDIFCAVVDNYGDIGVTWRLSKQLAREYQLPIVLWVDDLKSFAHILPTLNPTLGSQTLEGVTINQWNMPLNI DYTPGAVLIEAFACELPDEVKAIAKCAPTPPLWLNLEYLSAEDWVDGCHGLPSLQSGGINKYFYMPGFSAASGGLICEKS LFDERDAWQADSANKLTLFRSLGLSGIKADDKIVSLFSYETLALEGLCARWQASSSPVHLLVPKGRSLNSLASYLPKAPA DIAAGEQFCQGALTIHILPMTDQTGYDRLLWSADFNIIRGEDSFLRAQWAGRPFIWHIYQQEEDYHLVKLEAFMRLYCDN LAPEIADCWKNLNLAFNQQQADAVQQHWQNIESFALPLLAHAKQWPIDALKTTDLATRLVQFVKKSLR
Sequences:
>Translated_388_residues MTSPKSSHWDIFCAVVDNYGDIGVTWRLSKQLAREYQLPIVLWVDDLKSFAHILPTLNPTLGSQTLEGVTINQWNMPLNI DYTPGAVLIEAFACELPDEVKAIAKCAPTPPLWLNLEYLSAEDWVDGCHGLPSLQSGGINKYFYMPGFSAASGGLICEKS LFDERDAWQADSANKLTLFRSLGLSGIKADDKIVSLFSYETLALEGLCARWQASSSPVHLLVPKGRSLNSLASYLPKAPA DIAAGEQFCQGALTIHILPMTDQTGYDRLLWSADFNIIRGEDSFLRAQWAGRPFIWHIYQQEEDYHLVKLEAFMRLYCDN LAPEIADCWKNLNLAFNQQQADAVQQHWQNIESFALPLLAHAKQWPIDALKTTDLATRLVQFVKKSLR >Mature_387_residues TSPKSSHWDIFCAVVDNYGDIGVTWRLSKQLAREYQLPIVLWVDDLKSFAHILPTLNPTLGSQTLEGVTINQWNMPLNID YTPGAVLIEAFACELPDEVKAIAKCAPTPPLWLNLEYLSAEDWVDGCHGLPSLQSGGINKYFYMPGFSAASGGLICEKSL FDERDAWQADSANKLTLFRSLGLSGIKADDKIVSLFSYETLALEGLCARWQASSSPVHLLVPKGRSLNSLASYLPKAPAD IAAGEQFCQGALTIHILPMTDQTGYDRLLWSADFNIIRGEDSFLRAQWAGRPFIWHIYQQEEDYHLVKLEAFMRLYCDNL APEIADCWKNLNLAFNQQQADAVQQHWQNIESFALPLLAHAKQWPIDALKTTDLATRLVQFVKKSLR
Specific function: Unknown
COG id: COG4394
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43523; Mature: 43392
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPKSSHWDIFCAVVDNYGDIGVTWRLSKQLAREYQLPIVLWVDDLKSFAHILPTLNPT CCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCC LGSQTLEGVTINQWNMPLNIDYTPGAVLIEAFACELPDEVKAIAKCAPTPPLWLNLEYLS CCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEEC AEDWVDGCHGLPSLQSGGINKYFYMPGFSAASGGLICEKSLFDERDAWQADSANKLTLFR CHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEEHHHCCCCCCCCCCCCCEEEEEH SLGLSGIKADDKIVSLFSYETLALEGLCARWQASSSPVHLLVPKGRSLNSLASYLPKAPA HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCC DIAAGEQFCQGALTIHILPMTDQTGYDRLLWSADFNIIRGEDSFLRAQWAGRPFIWHIYQ HHHCCHHHHCCCEEEEEEECCCCCCCCCEEEECCCEEEECCCCEEEHHCCCCCEEEEEEE QEEDYHLVKLEAFMRLYCDNLAPEIADCWKNLNLAFNQQQADAVQQHWQNIESFALPLLA CCCCCEEEHHHHHHHHHHHHCCHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHH HAKQWPIDALKTTDLATRLVQFVKKSLR HCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TSPKSSHWDIFCAVVDNYGDIGVTWRLSKQLAREYQLPIVLWVDDLKSFAHILPTLNPT CCCCCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCC LGSQTLEGVTINQWNMPLNIDYTPGAVLIEAFACELPDEVKAIAKCAPTPPLWLNLEYLS CCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEEEEC AEDWVDGCHGLPSLQSGGINKYFYMPGFSAASGGLICEKSLFDERDAWQADSANKLTLFR CHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEEHHHCCCCCCCCCCCCCEEEEEH SLGLSGIKADDKIVSLFSYETLALEGLCARWQASSSPVHLLVPKGRSLNSLASYLPKAPA HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCC DIAAGEQFCQGALTIHILPMTDQTGYDRLLWSADFNIIRGEDSFLRAQWAGRPFIWHIYQ HHHCCHHHHCCCEEEEEEECCCCCCCCCEEEECCCEEEECCCCEEEHHCCCCCEEEEEEE QEEDYHLVKLEAFMRLYCDNLAPEIADCWKNLNLAFNQQQADAVQQHWQNIESFALPLLA CCCCCEEEHHHHHHHHHHHHCCHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHH HAKQWPIDALKTTDLATRLVQFVKKSLR HCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA