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The map label for this gene is hypA [H]

Identifier: 119774805

GI number: 119774805

Start: 2042513

End: 2042878

Strand: Reverse

Name: hypA [H]

Synonym: Sama_1669

Alternate gene names: 119774805

Gene position: 2042878-2042513 (Counterclockwise)

Preceding gene: 119774806

Following gene: 119774804

Centisome position: 47.44

GC content: 55.74

Gene sequence:

>366_bases
ATGCATGAATTTTCCATCGTCCAGGCGCTGCTCGACAGCTGCGAGCAACATGCCCGCAGCGTCGGGGCAACTGGGATAAG
TCGGGTCAGTATTCGCATTGGCGCCCTGAGTGGTGTCGAGCCCGCCCTGCTTGCCACGGCTTTTGATACCTTTAAGCTGG
ATGGTCGCTGCGCCAACGCCAGTCTGGACATGGAAATAGAACCCCTGAGGCTCGATTGCAATGAATGCGGTTACCAGGGC
GAGGCAGATGGCCACAGGGTGTTGTGTCCAAAGTGTCAGAGTCCCTTCACCCGGGTAATCGGTGGTGAAGATATGTTGCT
TTTACAGCTTGAACTCACTGGAACCGACCGGACAGAAGCTTACTGA

Upstream 100 bases:

>100_bases
TCGGTGAAAGCCCGGCCGGGCGAGTGATACTGCACACCCCATGGGGCAGTAACAGGTACCTCGACCTGCCCGCCGGTGAA
TTACTGCCAAGGATTTGCTG

Downstream 100 bases:

>100_bases
CATTCACGTGTGAATGGGTCTGCTGCGTGGGGCGACAGTCGCCCCTTTATCGGCGCACCTCGGTTGTTCCGCCTCCACAC
TAAAGCCATCGCACCACAAT

Product: hydrogenase expression/formation protein HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MHEFSIVQALLDSCEQHARSVGATGISRVSIRIGALSGVEPALLATAFDTFKLDGRCANASLDMEIEPLRLDCNECGYQG
EADGHRVLCPKCQSPFTRVIGGEDMLLLQLELTGTDRTEAY

Sequences:

>Translated_121_residues
MHEFSIVQALLDSCEQHARSVGATGISRVSIRIGALSGVEPALLATAFDTFKLDGRCANASLDMEIEPLRLDCNECGYQG
EADGHRVLCPKCQSPFTRVIGGEDMLLLQLELTGTDRTEAY
>Mature_121_residues
MHEFSIVQALLDSCEQHARSVGATGISRVSIRIGALSGVEPALLATAFDTFKLDGRCANASLDMEIEPLRLDCNECGYQG
EADGHRVLCPKCQSPFTRVIGGEDMLLLQLELTGTDRTEAY

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR004039 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 13117; Mature: 13117

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEFSIVQALLDSCEQHARSVGATGISRVSIRIGALSGVEPALLATAFDTFKLDGRCANA
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHEEECCEECCC
SLDMEIEPLRLDCNECGYQGEADGHRVLCPKCQSPFTRVIGGEDMLLLQLELTGTDRTEA
CCCCEEEEEEECHHHCCCCCCCCCCEEECCCCCCCHHHHCCCCCEEEEEEEECCCCCCCC
Y
C
>Mature Secondary Structure
MHEFSIVQALLDSCEQHARSVGATGISRVSIRIGALSGVEPALLATAFDTFKLDGRCANA
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHEEECCEECCC
SLDMEIEPLRLDCNECGYQGEADGHRVLCPKCQSPFTRVIGGEDMLLLQLELTGTDRTEA
CCCCEEEEEEECHHHCCCCCCCCCCEEECCCCCCCHHHHCCCCCEEEEEEEECCCCCCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA