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The map label for this gene is ydaM [H]

Identifier: 119774804

GI number: 119774804

Start: 2041211

End: 2042281

Strand: Reverse

Name: ydaM [H]

Synonym: Sama_1668

Alternate gene names: 119774804

Gene position: 2042281-2041211 (Counterclockwise)

Preceding gene: 119774805

Following gene: 119774801

Centisome position: 47.43

GC content: 53.87

Gene sequence:

>1071_bases
GTGCAACTGGTCTGGCAGGTTCCCAAACGCGCAGCGCTGCTGTTTCATCTCGTGGCCATGGCAACCCTGGTGCTTTACTG
CGCCTATCGTGTGTCCCTCGGACACTGGCCCATGGTGTTTATTTACGGCCTGTCACTCATCCCACTCACCCTGTCATTTG
TAAAAGAACTCCGTGGTCAGGCAAGCCCGGTGAACCGTATGGTAACCCTGCTGTTGGTGTCCATTGGTATCGCAGCCACC
TGCCTTGAAATTGGCTACGCCGGGATGATTTTTATCTTTCCCGCCATCTTCATTTATTTTTTTCTGTTTAATATCCGGGC
AGCGCTGATGCTCTCGAGTGCATTTACCGCGCTGTGCCTCATCTGCGGCGCGCAGGTCGAGGCTAACGATGTGATAGCCC
GCTTCGCCGTCGCCTCGGTCAATTGCATCATTTTTGGCGCAGTTTTCGCTTTCATCCTTGCGAAACAGCACGACTCTTTG
GTGCAAATCGCCCAGCGCGATCCTCTTACGGGTTTGTTTAATCGAAGCAAACTGGAGTTGGATCTGGCTGCGCTCGCCCC
GGCAACTCAGGCCATACTCATGCTGCTGGATGTAGACCATTTTAAAAGGATCAACGATGTACATGGTCATCAGATGGGTG
ATAAGGTGCTGACATCGTTGGGAAAGCTATTGGATGCCCTGCTGCCGGATGTGGCGACCGCCTACCGCTTTGGTGGTGAA
GAGTTTCTGGTGCTGTTTAACCTGACAGAACCCTCTGCATTCAATGAGACTGCGCTCAATCTTGCCAAGACAACCGCCGG
GCGGTTTCAGGCGGCATTGCGCTGTGTCGATGTGGTGCCCGGCAGCACCATTACCTGTTCCATCGGTATCGCCCAGCGGA
TCGCGGGCGAACATATTCCGCCCTGGTTTGACCGGGCAGATGCTGCCCTGTATCGCGCCAAGCGTTCAGGACGAGATCAG
GTGTGTGTATTCGAAGAGACTTTTGACGCCGAAGACATCCCCATAAAAGACACAGTAACCGACTCAGATACGGCGATAGA
TGCCTTGGATACCGGGCTGGGTAACAAATAG

Upstream 100 bases:

>100_bases
TTACCAGTTCGTTACTCTACCATCCCGCAAAAATCAGAAGCAATTCAGGTCATCCTTTCGTATAGTAACCTCAATCAAGA
CGTCAATCGGGTAACTCAGG

Downstream 100 bases:

>100_bases
TTGAGCATGCCATTGTATAGGACAAGCTTTATTCCTGGCGCGATCCAAGCCTTCCAAAAAGTCCACTAGGGACGTGTTGC
TCCAATGACATCTTTCGCTT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MQLVWQVPKRAALLFHLVAMATLVLYCAYRVSLGHWPMVFIYGLSLIPLTLSFVKELRGQASPVNRMVTLLLVSIGIAAT
CLEIGYAGMIFIFPAIFIYFFLFNIRAALMLSSAFTALCLICGAQVEANDVIARFAVASVNCIIFGAVFAFILAKQHDSL
VQIAQRDPLTGLFNRSKLELDLAALAPATQAILMLLDVDHFKRINDVHGHQMGDKVLTSLGKLLDALLPDVATAYRFGGE
EFLVLFNLTEPSAFNETALNLAKTTAGRFQAALRCVDVVPGSTITCSIGIAQRIAGEHIPPWFDRADAALYRAKRSGRDQ
VCVFEETFDAEDIPIKDTVTDSDTAIDALDTGLGNK

Sequences:

>Translated_356_residues
MQLVWQVPKRAALLFHLVAMATLVLYCAYRVSLGHWPMVFIYGLSLIPLTLSFVKELRGQASPVNRMVTLLLVSIGIAAT
CLEIGYAGMIFIFPAIFIYFFLFNIRAALMLSSAFTALCLICGAQVEANDVIARFAVASVNCIIFGAVFAFILAKQHDSL
VQIAQRDPLTGLFNRSKLELDLAALAPATQAILMLLDVDHFKRINDVHGHQMGDKVLTSLGKLLDALLPDVATAYRFGGE
EFLVLFNLTEPSAFNETALNLAKTTAGRFQAALRCVDVVPGSTITCSIGIAQRIAGEHIPPWFDRADAALYRAKRSGRDQ
VCVFEETFDAEDIPIKDTVTDSDTAIDALDTGLGNK
>Mature_356_residues
MQLVWQVPKRAALLFHLVAMATLVLYCAYRVSLGHWPMVFIYGLSLIPLTLSFVKELRGQASPVNRMVTLLLVSIGIAAT
CLEIGYAGMIFIFPAIFIYFFLFNIRAALMLSSAFTALCLICGAQVEANDVIARFAVASVNCIIFGAVFAFILAKQHDSL
VQIAQRDPLTGLFNRSKLELDLAALAPATQAILMLLDVDHFKRINDVHGHQMGDKVLTSLGKLLDALLPDVATAYRFGGE
EFLVLFNLTEPSAFNETALNLAKTTAGRFQAALRCVDVVPGSTITCSIGIAQRIAGEHIPPWFDRADAALYRAKRSGRDQ
VCVFEETFDAEDIPIKDTVTDSDTAIDALDTGLGNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=36.7567567567568, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786584, Length=230, Percent_Identity=29.1304347826087, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=36.4161849710983, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787056, Length=177, Percent_Identity=33.8983050847458, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=32.9411764705882, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=32.9545454545455, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=204, Percent_Identity=30.3921568627451, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=33.1360946745562, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=34.6368715083799, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI87081974, Length=206, Percent_Identity=27.1844660194175, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38879; Mature: 38879

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVWQVPKRAALLFHLVAMATLVLYCAYRVSLGHWPMVFIYGLSLIPLTLSFVKELRGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
ASPVNRMVTLLLVSIGIAATCLEIGYAGMIFIFPAIFIYFFLFNIRAALMLSSAFTALCL
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICGAQVEANDVIARFAVASVNCIIFGAVFAFILAKQHDSLVQIAQRDPLTGLFNRSKLEL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHCCCCHHEE
DLAALAPATQAILMLLDVDHFKRINDVHGHQMGDKVLTSLGKLLDALLPDVATAYRFGGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EFLVLFNLTEPSAFNETALNLAKTTAGRFQAALRCVDVVPGSTITCSIGIAQRIAGEHIP
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCC
PWFDRADAALYRAKRSGRDQVCVFEETFDAEDIPIKDTVTDSDTAIDALDTGLGNK
CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MQLVWQVPKRAALLFHLVAMATLVLYCAYRVSLGHWPMVFIYGLSLIPLTLSFVKELRGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
ASPVNRMVTLLLVSIGIAATCLEIGYAGMIFIFPAIFIYFFLFNIRAALMLSSAFTALCL
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICGAQVEANDVIARFAVASVNCIIFGAVFAFILAKQHDSLVQIAQRDPLTGLFNRSKLEL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHCCCCHHEE
DLAALAPATQAILMLLDVDHFKRINDVHGHQMGDKVLTSLGKLLDALLPDVATAYRFGGE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EFLVLFNLTEPSAFNETALNLAKTTAGRFQAALRCVDVVPGSTITCSIGIAQRIAGEHIP
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCC
PWFDRADAALYRAKRSGRDQVCVFEETFDAEDIPIKDTVTDSDTAIDALDTGLGNK
CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]