| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774699
Identifier: 119774699
GI number: 119774699
Start: 1902081
End: 1902584
Strand: Reverse
Name: 119774699
Synonym: Sama_1562
Alternate gene names: NA
Gene position: 1902584-1902081 (Counterclockwise)
Preceding gene: 119774700
Following gene: 119774695
Centisome position: 44.18
GC content: 50.6
Gene sequence:
>504_bases ATGACAATATCCTTTGAGACTCAAAGACTGAGCGTGATTGAAATCACCAATGGCGTTGCTTGGTCTGAACGCTCCGACTT ACTGGAGCGAGTGCCCGCAATTTTAACCCCGGCAGTAGTTGAAAATCTTCCCCCCTACTTCCACGGCGTCGCATCTCCCG GTTCGGCAAGTATGTGGCTTGAACGTACGTTGCGAGACAGCCGGTTACTCCAGATCAACGCCCAAACGCGCGAAATAATA GGTTTCCTCTTTATCCACGTAGAGAACGAACACCATGCCCACATCGGCTATTTGCTGGCACAGGAGTATTGGGGCAAAGG CCTGGCCACTGAATTACTGCAGGGATTCATTCGCGCAGCGGCCAACAAAGAGTCATGGTTAACCCTTGTTGGCGGCGTTG AGCAGACCAATACGGCATCAGCAAAATTGCTTGAAAAGTTGGGCTTTACCGCCCAATCCCAGGGTGAAAACAGCCAGGTA TTTTATGAGTATCGGCTCTCTTAA
Upstream 100 bases:
>100_bases AAAACGATGCAAAGCCAGCGTGGCTCAATCATAATCGGTCATAATCGATTATCATCCGGTTTTTGCAGGGTGATTATCTA CATCCAATCAGGCAGTTAAC
Downstream 100 bases:
>100_bases CGGATGTCGGAACAAGTCGGTCAGCAGCGAGCCGTGCTACAGCCCTTGGCTTGATCCACAGTAAAGGTGTCAGACAAGTT AAGAGCAGATGATGAGCATA
Product: ferrichrome-binding protein
Products: NA
Alternate protein names: GCN5-Like N-Acetyltransferase; Acetyltransferase
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MTISFETQRLSVIEITNGVAWSERSDLLERVPAILTPAVVENLPPYFHGVASPGSASMWLERTLRDSRLLQINAQTREII GFLFIHVENEHHAHIGYLLAQEYWGKGLATELLQGFIRAAANKESWLTLVGGVEQTNTASAKLLEKLGFTAQSQGENSQV FYEYRLS
Sequences:
>Translated_167_residues MTISFETQRLSVIEITNGVAWSERSDLLERVPAILTPAVVENLPPYFHGVASPGSASMWLERTLRDSRLLQINAQTREII GFLFIHVENEHHAHIGYLLAQEYWGKGLATELLQGFIRAAANKESWLTLVGGVEQTNTASAKLLEKLGFTAQSQGENSQV FYEYRLS >Mature_166_residues TISFETQRLSVIEITNGVAWSERSDLLERVPAILTPAVVENLPPYFHGVASPGSASMWLERTLRDSRLLQINAQTREIIG FLFIHVENEHHAHIGYLLAQEYWGKGLATELLQGFIRAAANKESWLTLVGGVEQTNTASAKLLEKLGFTAQSQGENSQVF YEYRLS
Specific function: Unknown
COG id: COG1670
COG function: function code J; Acetyltransferases, including N-acetylases of ribosomal proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18703; Mature: 18572
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISFETQRLSVIEITNGVAWSERSDLLERVPAILTPAVVENLPPYFHGVASPGSASMWL CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHCCHHHHCCCCCCCHHHHH ERTLRDSRLLQINAQTREIIGFLFIHVENEHHAHIGYLLAQEYWGKGLATELLQGFIRAA HHHHCCCEEEEECCHHHHEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH ANKESWLTLVGGVEQTNTASAKLLEKLGFTAQSQGENSQVFYEYRLS CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure TISFETQRLSVIEITNGVAWSERSDLLERVPAILTPAVVENLPPYFHGVASPGSASMWL CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHCCHHHHCCCCCCCHHHHH ERTLRDSRLLQINAQTREIIGFLFIHVENEHHAHIGYLLAQEYWGKGLATELLQGFIRAA HHHHCCCEEEEECCHHHHEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH ANKESWLTLVGGVEQTNTASAKLLEKLGFTAQSQGENSQVFYEYRLS CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA