| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774695
Identifier: 119774695
GI number: 119774695
Start: 1898352
End: 1899065
Strand: Reverse
Name: 119774695
Synonym: Sama_1558
Alternate gene names: NA
Gene position: 1899065-1898352 (Counterclockwise)
Preceding gene: 119774699
Following gene: 162139899
Centisome position: 44.1
GC content: 52.1
Gene sequence:
>714_bases ATGAAAAGTTTCGGCGCCAACATTTTTGTGTTTGATGGTCCTGCGGTGTCCTTTTATGGCATGCCCTATACCACCCGCAT GACCATAGTACGGCTTAAAAATGACAAGCTCTGGGTGCACTCCCCCATTGAGCTCAATGATGAGTTGGTCCGTCAAGTGA ATGCACTGGGTGAAGTGGCCTATCTGATTGCCCCCAACAAACTGCATCATCTCTACATTGCCGCCTGGCAGACTCGCTGG CCAGAGGCCACGGCCTTTGCCGCCCCGGGCGTAGCCAATAAATGCCGCCATCTGCACTTTGATGCAGACCTCAATGACAA GGCACCTGCCGAGTGGCTAAGTGAAATCGATCAATGCATTTTTAAAGGATCGCCAGTGATGGAGGAAGCCGTGTTCTTTC ACAAAAGCTCACGCACTCTCATTGTCACCGATTTGATTGAAAATTTCAGTCCGGGGCATTTCAATGCATGGCAGCGACCA CTTGCCCGAATAACAGGCATTCTGGCGCCAAACGGTAAAACACCGCTGGATTGGCGCTTATCTTTTATGAATGGACGGCA CAAGGCGAAAGAAGCGGTGGCGCAGTTTCGCCGCTGGCAGCCTGAACAGCTGATACTCGCCCACGGTGAATGCGTCAATC GGGACGCCATGGTCTTTATTGAGCGCTCGTTCAGTTGGGTCGGCCTTCAGCAAGCCGAAACAGCAGATGTATAG
Upstream 100 bases:
>100_bases CAGCATGCTAAGGCCACAGCTCGCACTATTCACCTATGCCCCTTCTACCCGGGTCGGCGTACAATCCCGATGGCTATCCC ATGCAGTCAAAGGAGATGAC
Downstream 100 bases:
>100_bases TGCCCAGCAACAGAACCGCCATGGGCAATACAGCAGATTTACTGCCAAGGTGCAGGTAATCTGAATTTAACTGCACGTAA AATGCGGGCAACAAGCAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MKSFGANIFVFDGPAVSFYGMPYTTRMTIVRLKNDKLWVHSPIELNDELVRQVNALGEVAYLIAPNKLHHLYIAAWQTRW PEATAFAAPGVANKCRHLHFDADLNDKAPAEWLSEIDQCIFKGSPVMEEAVFFHKSSRTLIVTDLIENFSPGHFNAWQRP LARITGILAPNGKTPLDWRLSFMNGRHKAKEAVAQFRRWQPEQLILAHGECVNRDAMVFIERSFSWVGLQQAETADV
Sequences:
>Translated_237_residues MKSFGANIFVFDGPAVSFYGMPYTTRMTIVRLKNDKLWVHSPIELNDELVRQVNALGEVAYLIAPNKLHHLYIAAWQTRW PEATAFAAPGVANKCRHLHFDADLNDKAPAEWLSEIDQCIFKGSPVMEEAVFFHKSSRTLIVTDLIENFSPGHFNAWQRP LARITGILAPNGKTPLDWRLSFMNGRHKAKEAVAQFRRWQPEQLILAHGECVNRDAMVFIERSFSWVGLQQAETADV >Mature_237_residues MKSFGANIFVFDGPAVSFYGMPYTTRMTIVRLKNDKLWVHSPIELNDELVRQVNALGEVAYLIAPNKLHHLYIAAWQTRW PEATAFAAPGVANKCRHLHFDADLNDKAPAEWLSEIDQCIFKGSPVMEEAVFFHKSSRTLIVTDLIENFSPGHFNAWQRP LARITGILAPNGKTPLDWRLSFMNGRHKAKEAVAQFRRWQPEQLILAHGECVNRDAMVFIERSFSWVGLQQAETADV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26976; Mature: 26976
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSFGANIFVFDGPAVSFYGMPYTTRMTIVRLKNDKLWVHSPIELNDELVRQVNALGEVA CCCCCCEEEEECCCEEEEECCCEEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHEE YLIAPNKLHHLYIAAWQTRWPEATAFAAPGVANKCRHLHFDADLNDKAPAEWLSEIDQCI EEECCCCEEEEEEEEECCCCCCCCEECCCCCHHHHHEEEECCCCCCCCHHHHHHHHHHHH FKGSPVMEEAVFFHKSSRTLIVTDLIENFSPGHFNAWQRPLARITGILAPNGKTPLDWRL HCCCCHHHHHHHEECCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHEEECCCCCCCCEEEE SFMNGRHKAKEAVAQFRRWQPEQLILAHGECVNRDAMVFIERSFSWVGLQQAETADV EECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCEECCCCCCCCCC >Mature Secondary Structure MKSFGANIFVFDGPAVSFYGMPYTTRMTIVRLKNDKLWVHSPIELNDELVRQVNALGEVA CCCCCCEEEEECCCEEEEECCCEEEEEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHEE YLIAPNKLHHLYIAAWQTRWPEATAFAAPGVANKCRHLHFDADLNDKAPAEWLSEIDQCI EEECCCCEEEEEEEEECCCCCCCCEECCCCCHHHHHEEEECCCCCCCCHHHHHHHHHHHH FKGSPVMEEAVFFHKSSRTLIVTDLIENFSPGHFNAWQRPLARITGILAPNGKTPLDWRL HCCCCHHHHHHHEECCCCEEEEEEHHHCCCCCCCCHHHHHHHHHHEEECCCCCCCCEEEE SFMNGRHKAKEAVAQFRRWQPEQLILAHGECVNRDAMVFIERSFSWVGLQQAETADV EECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA