Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774584

Identifier: 119774584

GI number: 119774584

Start: 1757126

End: 1758889

Strand: Reverse

Name: 119774584

Synonym: Sama_1447

Alternate gene names: NA

Gene position: 1758889-1757126 (Counterclockwise)

Preceding gene: 119774595

Following gene: 119774579

Centisome position: 40.85

GC content: 53.29

Gene sequence:

>1764_bases
ATGATCCGTTACAGCATTATTCCAAGTGATCCCAAAGCTCATCTGTTTGAGGTCAATCTGGAGATCCCAACCCCAAGTGT
TAACCAATTGCTTTCGTTGCCAGCCTGGATCCCGGGCTCGTATATGGTGCGTGACTTTGCCCGCAATCTGATTGGAATCA
AAGCCTGGCAAGCGAATAACCCCGTCGCTCTGACTCAACTCGATAAACAACGTTGGCAAGTGGAAAACCGCTCAACAGAG
CCGCTGCGCCTGTCATATCAGGTGTACGCATTCGACCTGTCGGTACGCAGTGCACATCTGGATATGACCCATGGTTTTTT
CAATGGCTCCAGTGTGTTTCTGGCGGTAGAAGGCCAAACCGACGGACCGCTGTGGGTTGAGATTCAGACGCCGACCGAGA
TTGCCCTCAATCATTGGCGAGTGGCGACAACCCTGCCAAGACGCAGCGGCGATGCCTGGCAGTTTGGCGCCTTTGAAGCC
GAAAACTATGACGCCCTTATCGACCACCCGGTAGAAATGGGTGACTTTACCCAGGCAAGTTTTGAGGCCTGCGGCGTGCC
CCACCACATAGTGCTGACCGGCCGCCATCGCTGCGATATGGAGCGCCTTTGCCAGGATTTAAAAGCCATCTGCGAAACGC
AAATACAGCTGTTTGGTGCGCCAGCCCCCTTTGATGAATACCTGTTTATGACCATGGTATTGGACAATGGCTTTGGCGGA
TTGGAACACCGCAGCTCAACGGCACTGGTGTGCTCACGTAAAGATTTGCCGCTGTCCATGGACGACAAAGTCAACAAGGA
CTATCGCACTTATTTATCCCTGTGCAGCCATGAGTATTTCCACAGCTGGAACGTTAAGCGGATTAAACCCGCTACCTTTA
TCCCCTATTCGCTGGAGAGTGAGAGCTACACCCGGCAATTGTGGGCTTACGAAGGACTGACGTCTTACTATGACGACCTG
CTGACGCTTAAAGCGGGCAAAGTCGATACCGAAACCTACCTGGACATGCTCAGTGAAACCATGACACGGGTATACCGGGG
TGTGGGCCGTTTCAAACAAAGCCTCAGGGATTCGAGCTTTAATGCCTGGACCAAGTTTTACAAACAGGATGAAAATGCCC
AAAACGCCATCGTAAGCTATTACACCAAGGGCGCACTCTTCGGCCTGTATCTCGATCTTGTCATCCGCAAGGAAACCGCA
GGTAAGGAGAGCCTGGACTCCCTGATGCGCCTGTTATGGGAGCGTTTTGGACTGACCGGACAGGGAACTGACGAACACAG
TCATCAGGCTCTGGTAGCAGAGCTGCTTGGCCGCGATGTGAGCGATATTTTCGCCTATTTGGATAACACGGACGACTTAC
CCCTCGCCCCGCTGCTTGCCGAGTTTGGTGTTCACATGGCGCTCAGGGCCGCAAGCGGTCAAAACGACACCGGGGGCGGA
AAACCTTCGCCACTGACACTGTCTCTTGGTGCCAAATTCAAGGCAGAGCCATTGGGGGTAAGAATTCAAACGGTGGCAGA
ATCCAGCAGTGCACATCTGGCCGGTTTATCGGCTGGTGACTTACTGATTGCCATCGATGGGCTTCAGGCCACGGCCAATC
TTGAAAACGTGCTTAACAGTTACAATGAAGGCGATGAGCTGGCGCTGCATTTCTTCCGCCGCGACGAATTGATGACTGCC
AAATTACGGCTTCAGGCAGCCCCTCTGGATACAGTGTCGCTGCATCTGGAAGATGCCACTGCGATAGCGGCCTGGCTCGG
GTAA

Upstream 100 bases:

>100_bases
AGCAAGACCCAGCACATTTGGGTAAGAGAAAAGCCAACTCCCTTTGCCAACAGAGCTGGAATTTGGCAGCATGCCTGCAT
AATTGATTTCGGGAACCATT

Downstream 100 bases:

>100_bases
CTGAGTCAGAAACAATAAAAAAGGCGTCCTGGACGCCTTTCTTATTGCTCAGCTGCATCGATGACTCTACAAAAACACCA
ACACCGTCAAACATGCACTT

Product: protease

Products: NA

Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Metallopeptidase; Aminopeptidase N Family Protein; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; Glycyl Aminopeptidase Protein; PDZ/DHR/GLGFPeptidase M; Signaling Protein; M61 Glycyl Aminopeptidase Protein; PDZ Domain Protein; M61 Glycyl Aminopeptidase Family Protein

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANNPVALTQLDKQRWQVENRSTE
PLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQTDGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEA
ENYDALIDHPVEMGDFTQASFEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG
LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLESESYTRQLWAYEGLTSYYDDL
LTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSFNAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETA
GKESLDSLMRLLWERFGLTGQGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG
KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNSYNEGDELALHFFRRDELMTA
KLRLQAAPLDTVSLHLEDATAIAAWLG

Sequences:

>Translated_587_residues
MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANNPVALTQLDKQRWQVENRSTE
PLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQTDGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEA
ENYDALIDHPVEMGDFTQASFEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG
LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLESESYTRQLWAYEGLTSYYDDL
LTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSFNAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETA
GKESLDSLMRLLWERFGLTGQGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG
KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNSYNEGDELALHFFRRDELMTA
KLRLQAAPLDTVSLHLEDATAIAAWLG
>Mature_587_residues
MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANNPVALTQLDKQRWQVENRSTE
PLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQTDGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEA
ENYDALIDHPVEMGDFTQASFEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG
LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLESESYTRQLWAYEGLTSYYDDL
LTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSFNAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETA
GKESLDSLMRLLWERFGLTGQGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG
KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNSYNEGDELALHFFRRDELMTA
KLRLQAAPLDTVSLHLEDATAIAAWLG

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65721; Mature: 65721

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANN
CEEEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHEEEEECCCC
PVALTQLDKQRWQVENRSTEPLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQT
CEEEEEHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCEECCCEEEEEEECCC
DGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEAENYDALIDHPVEMGDFTQAS
CCCEEEEEECCHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCHHH
FEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHEEEEEEEECCCCC
LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLES
CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEECCEECCC
ESYTRQLWAYEGLTSYYDDLLTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSF
CHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
NAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETAGKESLDSLMRLLWERFGLTG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCC
QGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG
CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCHHEEEEECCCCCCCCCC
KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNS
CCCCEEEEECCCEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHC
YNEGDELALHFFRRDELMTAKLRLQAAPLDTVSLHLEDATAIAAWLG
CCCCCHHEEHHHHHCCCEEEEEEEEECCCCEEEEEECCHHHHHHHCC
>Mature Secondary Structure
MIRYSIIPSDPKAHLFEVNLEIPTPSVNQLLSLPAWIPGSYMVRDFARNLIGIKAWQANN
CEEEEECCCCCCCEEEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHHHEEEEECCCC
PVALTQLDKQRWQVENRSTEPLRLSYQVYAFDLSVRSAHLDMTHGFFNGSSVFLAVEGQT
CEEEEEHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEEEEEEECCEECCCEEEEEEECCC
DGPLWVEIQTPTEIALNHWRVATTLPRRSGDAWQFGAFEAENYDALIDHPVEMGDFTQAS
CCCEEEEEECCHHHHHCCEEEEEECCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCCHHH
FEACGVPHHIVLTGRHRCDMERLCQDLKAICETQIQLFGAPAPFDEYLFMTMVLDNGFGG
HHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHEEEEEEEECCCCC
LEHRSSTALVCSRKDLPLSMDDKVNKDYRTYLSLCSHEYFHSWNVKRIKPATFIPYSLES
CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEECCEECCC
ESYTRQLWAYEGLTSYYDDLLTLKAGKVDTETYLDMLSETMTRVYRGVGRFKQSLRDSSF
CHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
NAWTKFYKQDENAQNAIVSYYTKGALFGLYLDLVIRKETAGKESLDSLMRLLWERFGLTG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCC
QGTDEHSHQALVAELLGRDVSDIFAYLDNTDDLPLAPLLAEFGVHMALRAASGQNDTGGG
CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCHHEEEEECCCCCCCCCC
KPSPLTLSLGAKFKAEPLGVRIQTVAESSSAHLAGLSAGDLLIAIDGLQATANLENVLNS
CCCCEEEEECCCEECCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHC
YNEGDELALHFFRRDELMTAKLRLQAAPLDTVSLHLEDATAIAAWLG
CCCCCHHEEHHHHHCCCEEEEEEEEECCCCEEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA