| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774595
Identifier: 119774595
GI number: 119774595
Start: 1767926
End: 1768660
Strand: Reverse
Name: 119774595
Synonym: Sama_1458
Alternate gene names: NA
Gene position: 1768660-1767926 (Counterclockwise)
Preceding gene: 119774596
Following gene: 119774584
Centisome position: 41.07
GC content: 53.33
Gene sequence:
>735_bases ATGAAGACACAATTACTGGTCGAGACCCCCACTCACAAATGGCTGTATTTCGGCAGAGACCCTGAGAAAAACGACAAAAT CATCGACACCAACCAATATCTGGTTCAAAGCGGAAATCAGTCGTTGCTAATGGACCCCGGCGGAATTGAACTTTTTGCCC CCATGTTGGCCAGTCTGGTGCGCCATATCCCCCTCGAGCAGCTGACCTATCTTTTTGCCTCCCATCAGGATCCGGACATC ATTTCATCCCTCGGTCTGTGGGATCAGACGCTGCCCAAGGCCAAGCTCTACGCCCCCTGGCTGTGGGAGGGGTTTATCCG TCACTTCGGGATGAACAACATCAGCTACGAGCCCATCAAGGATAAGGGGGGGAAATTACAGGTGGGTGAAGTGGAGCTGC AGTTTGTACCCGCCCATTACCTGCATGCGTCCGGCAATTTTCACGTGTATGACCCAGTGGCCAAGGTGCTGATGTCGGGG GACGTGGGCGCGGCGCTTGAGCCCGCAGAGGCTGACATTTTTGTGGATGACTTTGCCAGTCACATCAGCAAGATGGAGTA CTTCCACCGTCGCTGGATGCCCTCCAATCGTGCCAAGAGTAACTGGGTGGCACGGATGCGGGATCTGGATATTCAGTACA TGTGCCCACAACATGGACGCATCTTTAAAGGTCCGCAGGTGAAAGCCTTTTTGGATTGGTTTGACAGTCTGGATGTGGGT ATCGGACTGGATTAA
Upstream 100 bases:
>100_bases GACGTGGCCAACAAGGTCGATACGGTTGCCGCTCAGATCCGCGAGCGGGTAGATACTGCCATCCGCCTGTTCGATTCCCA TTGACGTTAAGGATTAACCA
Downstream 100 bases:
>100_bases TGCAAAAAAGGCCCCTGGGGGCCTTTTTTGATTGAGTACACTCAGCTAGAGATAACGAGCGTACTGCATACCGTCTCTGC CAGGTTTCACCGGCGCATCA
Product: flavoprotein
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Metallo-Beta-Lactamase Family Protein; Flavoprotein; Histidine Kinase; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Domain Protein; Metallo-Beta-Lactamase Superfamily Protein; Diguanylate Cyclase Domain Protein; Metallo-Beta-Lactamase Domain Protein; CDP-Abequose Synthase; Two-Component Sensor Histidine Kinase; Metallo-Beta-Lactamase Superfamily Hydrolase
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MKTQLLVETPTHKWLYFGRDPEKNDKIIDTNQYLVQSGNQSLLMDPGGIELFAPMLASLVRHIPLEQLTYLFASHQDPDI ISSLGLWDQTLPKAKLYAPWLWEGFIRHFGMNNISYEPIKDKGGKLQVGEVELQFVPAHYLHASGNFHVYDPVAKVLMSG DVGAALEPAEADIFVDDFASHISKMEYFHRRWMPSNRAKSNWVARMRDLDIQYMCPQHGRIFKGPQVKAFLDWFDSLDVG IGLD
Sequences:
>Translated_244_residues MKTQLLVETPTHKWLYFGRDPEKNDKIIDTNQYLVQSGNQSLLMDPGGIELFAPMLASLVRHIPLEQLTYLFASHQDPDI ISSLGLWDQTLPKAKLYAPWLWEGFIRHFGMNNISYEPIKDKGGKLQVGEVELQFVPAHYLHASGNFHVYDPVAKVLMSG DVGAALEPAEADIFVDDFASHISKMEYFHRRWMPSNRAKSNWVARMRDLDIQYMCPQHGRIFKGPQVKAFLDWFDSLDVG IGLD >Mature_244_residues MKTQLLVETPTHKWLYFGRDPEKNDKIIDTNQYLVQSGNQSLLMDPGGIELFAPMLASLVRHIPLEQLTYLFASHQDPDI ISSLGLWDQTLPKAKLYAPWLWEGFIRHFGMNNISYEPIKDKGGKLQVGEVELQFVPAHYLHASGNFHVYDPVAKVLMSG DVGAALEPAEADIFVDDFASHISKMEYFHRRWMPSNRAKSNWVARMRDLDIQYMCPQHGRIFKGPQVKAFLDWFDSLDVG IGLD
Specific function: Unknown
COG id: COG0426
COG function: function code C; Uncharacterized flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27920; Mature: 27920
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTQLLVETPTHKWLYFGRDPEKNDKIIDTNQYLVQSGNQSLLMDPGGIELFAPMLASLV CCCEEEEECCCCEEEEECCCCCCCCCEEECCHHHHHCCCCEEEECCCCHHHHHHHHHHHH RHIPLEQLTYLFASHQDPDIISSLGLWDQTLPKAKLYAPWLWEGFIRHFGMNNISYEPIK HHCCHHHHHHHHHCCCCCHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC DKGGKLQVGEVELQFVPAHYLHASGNFHVYDPVAKVLMSGDVGAALEPAEADIFVDDFAS CCCCEEEEEEEEEEEECCEEEECCCCEEEECHHHHHHHCCCCCCCCCCCCCCEEHHHHHH HISKMEYFHRRWMPSNRAKSNWVARMRDLDIQYMCPQHGRIFKGPQVKAFLDWFDSLDVG HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCCCEECCCCHHHHHHHHHCCCCC IGLD CCCC >Mature Secondary Structure MKTQLLVETPTHKWLYFGRDPEKNDKIIDTNQYLVQSGNQSLLMDPGGIELFAPMLASLV CCCEEEEECCCCEEEEECCCCCCCCCEEECCHHHHHCCCCEEEECCCCHHHHHHHHHHHH RHIPLEQLTYLFASHQDPDIISSLGLWDQTLPKAKLYAPWLWEGFIRHFGMNNISYEPIK HHCCHHHHHHHHHCCCCCHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC DKGGKLQVGEVELQFVPAHYLHASGNFHVYDPVAKVLMSGDVGAALEPAEADIFVDDFAS CCCCEEEEEEEEEEEECCEEEECCCCEEEECHHHHHHHCCCCCCCCCCCCCCEEHHHHHH HISKMEYFHRRWMPSNRAKSNWVARMRDLDIQYMCPQHGRIFKGPQVKAFLDWFDSLDVG HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECCCCCCEECCCCHHHHHHHHHCCCCC IGLD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA