Click here to switch to the map view.

The map label for this gene is 119774509

Identifier: 119774509

GI number: 119774509

Start: 1663163

End: 1663987

Strand: Reverse

Name: 119774509

Synonym: Sama_1372

Alternate gene names: NA

Gene position: 1663987-1663163 (Counterclockwise)

Preceding gene: 119774521

Following gene: 119774503

Centisome position: 38.64

GC content: 52.85

Gene sequence:

>825_bases
ATGTCTATACATCCAAGTTTGAATCTTGTTCAGCATGGGCTTTCACCCTATCATGGTAGCCCTGTACTTTTGCTGAATAT
CCTTATGACTCAAGCAACTGCAATAATTGTGGGCGCCAGCTCACACCTTGGCCGTGAATTGGTGACTCAACTCACACAGG
AAGGCACCCGAGTGGGTGTTCTGGTACCCGAGCCAGAACTGATGACAGAATTTATCCAGTCCCTCGGGGGCAACGTTGAG
ATAGAAGCCCTACCCATCACAGAGCCAGAACGCGCCATAGCTGCCTTTGAAAACCTGTGGCAGCGTATGGGCGGTGCCCA
TCTGGTATTGGTCAATACAGGGCTCAACTCCTATCACCCGGATCTGCCCTGGCAGATAGACGCCGATATCATCAAGGTTA
ACGTGCAGGGCTTTGCGCTGATTTGCAATACGGCGTTCAGATTACTGCGCCTGCAAGGGTACGGGCAACTGGCTGCCATC
AACTCCATCGCCGGTCAGCGAGGTGGCCCTGCCGTGGCTTACCATGCGTCCAAAGCCTTTGCGCAGAATTATCTCGAAGG
TTTATCGATGCATGCCCAGCGATTGAAACTCCCCATCACCATTACCGATCTGCAACTGGGACTGCTGGACAAAGCCGCCA
TGCAGCAAAGCCGCTTTTGGTTACAGCCACTGCCCAAAGTCGCCACGCAGATTTTACACGCACTGAAAAAAGGTAAGCGC
AGAGCCTACATCACCCGTCGCTGGGCGTTAGTGGCCTGGCTGATACGTCTGCTGCCGGAATACATCTACAACACCCGTCA
CTGGAAGAAAAAGGGCAAACATTGA

Upstream 100 bases:

>100_bases
CAGTCCAACCGCCCCCACCAATGCCGCCATCGGCAGGGCAACACGCAATAACCATTTCTTCATGGTGATAATCTCCTAAA
TCATACATAAAGACTTCTGG

Downstream 100 bases:

>100_bases
CAGCAATGTTCAATGAGAAAACAGCATGACAAAAGGCGCCCGGTGGGCGCCTTTTTTATCCAAGGTTTGGCAGGGAAGAA
ACAACCTTAGAATTTATAAC

Product: short chain dehydrogenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSIHPSLNLVQHGLSPYHGSPVLLLNILMTQATAIIVGASSHLGRELVTQLTQEGTRVGVLVPEPELMTEFIQSLGGNVE
IEALPITEPERAIAAFENLWQRMGGAHLVLVNTGLNSYHPDLPWQIDADIIKVNVQGFALICNTAFRLLRLQGYGQLAAI
NSIAGQRGGPAVAYHASKAFAQNYLEGLSMHAQRLKLPITITDLQLGLLDKAAMQQSRFWLQPLPKVATQILHALKKGKR
RAYITRRWALVAWLIRLLPEYIYNTRHWKKKGKH

Sequences:

>Translated_274_residues
MSIHPSLNLVQHGLSPYHGSPVLLLNILMTQATAIIVGASSHLGRELVTQLTQEGTRVGVLVPEPELMTEFIQSLGGNVE
IEALPITEPERAIAAFENLWQRMGGAHLVLVNTGLNSYHPDLPWQIDADIIKVNVQGFALICNTAFRLLRLQGYGQLAAI
NSIAGQRGGPAVAYHASKAFAQNYLEGLSMHAQRLKLPITITDLQLGLLDKAAMQQSRFWLQPLPKVATQILHALKKGKR
RAYITRRWALVAWLIRLLPEYIYNTRHWKKKGKH
>Mature_273_residues
SIHPSLNLVQHGLSPYHGSPVLLLNILMTQATAIIVGASSHLGRELVTQLTQEGTRVGVLVPEPELMTEFIQSLGGNVEI
EALPITEPERAIAAFENLWQRMGGAHLVLVNTGLNSYHPDLPWQIDADIIKVNVQGFALICNTAFRLLRLQGYGQLAAIN
SIAGQRGGPAVAYHASKAFAQNYLEGLSMHAQRLKLPITITDLQLGLLDKAAMQQSRFWLQPLPKVATQILHALKKGKRR
AYITRRWALVAWLIRLLPEYIYNTRHWKKKGKH

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 30504; Mature: 30373

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHPSLNLVQHGLSPYHGSPVLLLNILMTQATAIIVGASSHLGRELVTQLTQEGTRVGV
CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCEEEE
LVPEPELMTEFIQSLGGNVEIEALPITEPERAIAAFENLWQRMGGAHLVLVNTGLNSYHP
EECCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
DLPWQIDADIIKVNVQGFALICNTAFRLLRLQGYGQLAAINSIAGQRGGPAVAYHASKAF
CCCCEECCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEHHHHHH
AQNYLEGLSMHAQRLKLPITITDLQLGLLDKAAMQQSRFWLQPLPKVATQILHALKKGKR
HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCH
RAYITRRWALVAWLIRLLPEYIYNTRHWKKKGKH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure 
SIHPSLNLVQHGLSPYHGSPVLLLNILMTQATAIIVGASSHLGRELVTQLTQEGTRVGV
CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHCCCEEEE
LVPEPELMTEFIQSLGGNVEIEALPITEPERAIAAFENLWQRMGGAHLVLVNTGLNSYHP
EECCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
DLPWQIDADIIKVNVQGFALICNTAFRLLRLQGYGQLAAINSIAGQRGGPAVAYHASKAF
CCCCEECCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEHHHHHH
AQNYLEGLSMHAQRLKLPITITDLQLGLLDKAAMQQSRFWLQPLPKVATQILHALKKGKR
HHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCH
RAYITRRWALVAWLIRLLPEYIYNTRHWKKKGKH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]