Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774341

Identifier: 119774341

GI number: 119774341

Start: 1476653

End: 1477207

Strand: Reverse

Name: 119774341

Synonym: Sama_1204

Alternate gene names: NA

Gene position: 1477207-1476653 (Counterclockwise)

Preceding gene: 119774342

Following gene: 119774340

Centisome position: 34.3

GC content: 54.23

Gene sequence:

>555_bases
ATGCCGTTGAGAATATTACTGTTATTATCCTTTTTACTGACCGCATTGCCCGTGTATGCCTTTGACCCGTCTGGAACAAG
AGCCACGGCATATTTGCTGCTGGGCCTCGGGGGCTTTACGGCGCTGAATTTACTTGCTCAGTTGACGTTTTTCGCCGCGG
GCTTTTATCAGCAAACCGGATTTGCCAAAAAACACCTGCTGTTGTCTCTGCTGCCGGTCGCGTTGGGTACTGTACTTACC
CTTTGGGATACACGGGGCGGCGCCGAACTGGTGATGAATGGTGGCCTTCTGCTGGTGTCACTCGCCTTTGCCCTGTTGCC
CTGGCTGCTGATTGAAAAATCCGTCACACCGAGGCCACTCATTGCAGCGCTCCTGCCGGTACTCTTTTTAGCCATGGGCT
GTTTTATTGGCCCCATTACGGCCTTCGCGCTTATCACGGCCCATGCAGCCAGACCTAAGCAAACCCCTGTCGGTAAGTAT
TTGTGCGTGCTGGTGCTCTGCCTTGGGTATCCGCTGCTGGGCTACTACCTGTACCAGTTGGCAGGCAAGCTCTGA

Upstream 100 bases:

>100_bases
TGAGAAACACCCGAAAGCCATCATAAATCCCATCATCACCATTGCATGCAGCGCCACTTTAGGAGAAGGTTAACCAAACT
TATCTCTGGGGTTTGATGCC

Downstream 100 bases:

>100_bases
TGCAAACATTGGCCGCGTTGCTGCAAGAGGTGCGGGGTTGCCAATTATGTGCGGGCCTGCCGCTTGGGCCCAAACCGATA
TTGCAGGCAGAAAGCGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MPLRILLLLSFLLTALPVYAFDPSGTRATAYLLLGLGGFTALNLLAQLTFFAAGFYQQTGFAKKHLLLSLLPVALGTVLT
LWDTRGGAELVMNGGLLLVSLAFALLPWLLIEKSVTPRPLIAALLPVLFLAMGCFIGPITAFALITAHAARPKQTPVGKY
LCVLVLCLGYPLLGYYLYQLAGKL

Sequences:

>Translated_184_residues
MPLRILLLLSFLLTALPVYAFDPSGTRATAYLLLGLGGFTALNLLAQLTFFAAGFYQQTGFAKKHLLLSLLPVALGTVLT
LWDTRGGAELVMNGGLLLVSLAFALLPWLLIEKSVTPRPLIAALLPVLFLAMGCFIGPITAFALITAHAARPKQTPVGKY
LCVLVLCLGYPLLGYYLYQLAGKL
>Mature_183_residues
PLRILLLLSFLLTALPVYAFDPSGTRATAYLLLGLGGFTALNLLAQLTFFAAGFYQQTGFAKKHLLLSLLPVALGTVLTL
WDTRGGAELVMNGGLLLVSLAFALLPWLLIEKSVTPRPLIAALLPVLFLAMGCFIGPITAFALITAHAARPKQTPVGKYL
CVLVLCLGYPLLGYYLYQLAGKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19750; Mature: 19619

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLRILLLLSFLLTALPVYAFDPSGTRATAYLLLGLGGFTALNLLAQLTFFAAGFYQQTG
CCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FAKKHLLLSLLPVALGTVLTLWDTRGGAELVMNGGLLLVSLAFALLPWLLIEKSVTPRPL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH
IAALLPVLFLAMGCFIGPITAFALITAHAARPKQTPVGKYLCVLVLCLGYPLLGYYLYQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AGKL
HCCC
>Mature Secondary Structure 
PLRILLLLSFLLTALPVYAFDPSGTRATAYLLLGLGGFTALNLLAQLTFFAAGFYQQTG
CHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FAKKHLLLSLLPVALGTVLTLWDTRGGAELVMNGGLLLVSLAFALLPWLLIEKSVTPRPL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH
IAALLPVLFLAMGCFIGPITAFALITAHAARPKQTPVGKYLCVLVLCLGYPLLGYYLYQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AGKL
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA