| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774318
Identifier: 119774318
GI number: 119774318
Start: 1443797
End: 1445113
Strand: Direct
Name: 119774318
Synonym: Sama_1181
Alternate gene names: NA
Gene position: 1443797-1445113 (Clockwise)
Preceding gene: 119774317
Following gene: 119774319
Centisome position: 33.53
GC content: 58.16
Gene sequence:
>1317_bases ATGTCTGCACCTGCTTTGTCCCGTGCGCCGTTGCCGCAAAACGCCCCGTCATCGGGCGCCGAGCATGAACTTCAGCTGCC GCAAGTCATGTCGACACTTGCCGCGCTGGCTTGTGTATTGCAGCAAGGGGCAGCGCTTTGGGATTTTCGGCCTTTTGACC GCCAGGATAACCCTTGGCGGCTAAGCTTTCCCAATCTCTGGCAAGCAATTGAGACGCTTAATGATGATTGCCTTGACGCG TTGGATCTGGTGCAGGCGGAACTCTGTCATAGCCTTTGGCCAGCGCTGTGCCAAGACCTAAAGGTAAACGGACTCAAGGT GTGGGATCAGTCGCTTTTTTTATGGCAATTACCGCACCACTCGCAGGCAAGTCAAACCCTGGAGGCGCTGCCGGAACATG ATCTCAGCCGTTTTTCCGCCGGGATCAAAGGCCGCAAATGGCAACAGATAAGCCGCTTTGCCAATATCGTCAGCCTGCCA CCTGCCCCGTATCCCTATCTGGAGTGGTGCGCCGGTAAAGGCCATCTTGGGAGACTCGTTGGGGCGGTAAGCCACAAGCC TGTGCTGAGCCTCGAGTGGCAGCAACAGCTGTGCATTGACGGAGAAAAGGAGGCGCAAAAGCGGGGTGTCAACCAACGCT TTGTCTGTGCCGATGCCTTTTCAGACGAGGCAGAGTTACTCCAGCGTGAGCAGCATGCACTTGCGCTCCACGCCTGCGGT GAGCTGCATCTGGTGCTGCTAAGGCGCGCCGCCGCAGCCCAAACCCGCGCCATCAGCCTGTCGCCCTGTTGTTACCACCT TATTCAAGGGGAGCAATACGTGGGGCTCAGCGCCAGCGCCAGAGCCACAGGACTGGTGCTCGATAAGCATGGCCTGCAGC TCCCCCTCAATCACTCGGTCGTTGCCAGTGCAAAAGAAAAGCAGGACCGCCTGAAGGAAGTTCAGTGGCGCCTGGGGTTC GACTGCCTGCAGCGCCATTTGCGCCGGGATGACAGCTACTTACCCTTACCCTCGGTGCGCCAAAGCCAGCTCTCCGGCAG TTTTGATGCCTTTTGCCGCTGGGCCTGTGAGCTTAAAGGCCTGGTGTTGCCCGCGGATTTTTATGCTGATGAATGGTTGG CCAAAGGATGCCAGCGCCAGCGACTAACCCGGCGATTGGATCTGGTGGCGCACCTCTTCAGGCCTGTGATTGAACAGTAT CTGCTACTGGACAGGGCCGCATTTTTGTTGGAATCGGGCTACCGTGTGAGCCTCAGTGCGTTCTGTCCCCCTGGGATGAC GCCCCGTAACGCCCTGATTGACGCCCGTCGTGATTGA
Upstream 100 bases:
>100_bases ATGCGTGCCTTGTATCCGCCGTTTTTGCATCCGGGAAACTGCAATAAGTCTTTTTGGCTTGTTATAATACCCCTCATCAT TTTTCAGACCCTCGCCAATC
Downstream 100 bases:
>100_bases AATAGCGTCACGAAACCGCTTTTATTGGCATTCACCTCTTTCGTTTGCCGTGCCCTTTATCCCCGATTGAAAAGGGACGA AAAGCCACGGCGTTCTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWRLSFPNLWQAIETLNDDCLDA LDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHHSQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLP PAPYPYLEWCAGKGHLGRLVGAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSVVASAKEKQDRLKEVQWRLGF DCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKGLVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQY LLLDRAAFLLESGYRVSLSAFCPPGMTPRNALIDARRD
Sequences:
>Translated_438_residues MSAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWRLSFPNLWQAIETLNDDCLDA LDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHHSQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLP PAPYPYLEWCAGKGHLGRLVGAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSVVASAKEKQDRLKEVQWRLGF DCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKGLVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQY LLLDRAAFLLESGYRVSLSAFCPPGMTPRNALIDARRD >Mature_437_residues SAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWRLSFPNLWQAIETLNDDCLDAL DLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHHSQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLPP APYPYLEWCAGKGHLGRLVGAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACGE LHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSVVASAKEKQDRLKEVQWRLGFD CLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKGLVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQYL LLDRAAFLLESGYRVSLSAFCPPGMTPRNALIDARRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49222; Mature: 49091
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWR CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE LSFPNLWQAIETLNDDCLDALDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHH ECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCC SQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLPPAPYPYLEWCAGKGHLGRLV CHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHH GAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG HHHCCCCEEEECHHHHHCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSV HHHHHHHHHHHHHHHCEEEECHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCHH VASAKEKQDRLKEVQWRLGFDCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKG HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCC LVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQYLLLDRAAFLLESGYRVSLSA EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE FCPPGMTPRNALIDARRD CCCCCCCCHHHHCCCCCC >Mature Secondary Structure SAPALSRAPLPQNAPSSGAEHELQLPQVMSTLAALACVLQQGAALWDFRPFDRQDNPWR CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE LSFPNLWQAIETLNDDCLDALDLVQAELCHSLWPALCQDLKVNGLKVWDQSLFLWQLPHH ECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCC SQASQTLEALPEHDLSRFSAGIKGRKWQQISRFANIVSLPPAPYPYLEWCAGKGHLGRLV CHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHH GAVSHKPVLSLEWQQQLCIDGEKEAQKRGVNQRFVCADAFSDEAELLQREQHALALHACG HHHCCCCEEEECHHHHHCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH ELHLVLLRRAAAAQTRAISLSPCCYHLIQGEQYVGLSASARATGLVLDKHGLQLPLNHSV HHHHHHHHHHHHHHHCEEEECHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCCCCCHH VASAKEKQDRLKEVQWRLGFDCLQRHLRRDDSYLPLPSVRQSQLSGSFDAFCRWACELKG HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCC LVLPADFYADEWLAKGCQRQRLTRRLDLVAHLFRPVIEQYLLLDRAAFLLESGYRVSLSA EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE FCPPGMTPRNALIDARRD CCCCCCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA