| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774317
Identifier: 119774317
GI number: 119774317
Start: 1440797
End: 1443505
Strand: Direct
Name: 119774317
Synonym: Sama_1180
Alternate gene names: NA
Gene position: 1440797-1443505 (Clockwise)
Preceding gene: 119774315
Following gene: 119774318
Centisome position: 33.46
GC content: 51.05
Gene sequence:
>2709_bases ATGAAATTTAAAAATTTCAAAGAGTTGTCTGTCAGTTTTGTGGCCTGCGCCTTACTGGCAGCCTGCGGCTCTGATGACCC CGATGAAATGCCAACGGTAACTGTTGCGAGTTCTGTGGCGCTGAAAGAAAACCGAAGCGTCGATATTATTTCGGTCGGTA AGGACGATGGTAGCTCGCTCAGCTATCAATGGACTCAGGAATCTGGTCCCACATTAACGCTGGCCAACATCACCAGTGCC ATCGTTGGTGTAACCGCGCCAAACGTTGATGCAGATGGGACTGCAGTGCTTAGGGTCACAGTGACAGACAGCGCCAATCA AACAGCCAGTGCCACCGTTTCGGTGCTGGTGGCCAACAATCAGTTGCCCACGGTTACTGCCGCCTTTGAAGGTGCAGTTG AAAAGTCGGCTGTGACCCTGACCGCCTCGGCAACAGATCCGGATGGCAGTATCAGCTCATATCTTTGGACTCAAACCTCT GGCGCCCCGGTAATCCTGACCGGTGAAACCACGGCTTCCTTGAGTTTTACGGCGCCAAGTGTTTCGGCTGATACCGATCT GGGCTTCAGTTTGATGGTTACTGACGATGATGATGAATCTGCTTCGGTAGTCGGAACTGTTACCGTGACCCCGGTCATGG TGACTTATACCGTCACAGGGAATGTCGCTGACGCAGCCTTTGCCGGCTCTGAAGTCAGCGGCACTTTGGCTGGCACCAGT TTCAGCACCACAACTGACAGCAATGGTGCTTTTACCTTGCCACTTAAAGCCGACGATGATGAAACCAATCTGTTTACCAA TCTCATGGTGAAGTCGTCCGGCACTGCAGGTTTGGAGTATTACAAGTTTGTTCCCCAACTGACAGCGGATCCGGTGCAGG CTGCTGTGGCAGGCAAGGTGAGCTCCAGAACGCAGGTTTCGCCACCTGCTGCCAAGGCTGATACTCTGGCCGATGAGGGC GCTAACGCTGTGTCTATCAATGCGGTCTCAACCGCCTTGTATTCGCTGATAGTCTCAGCCAACAATGGTGAGGTTCCGGC TGATTTAGATCAATTCACCTTTGTTGAAAAATCAGTCAGTCCGGATGAGTTGATAGAGGCCGCCGCTGTGGTGAAACTGC TTACTCAAGGGGGGGCCTTTGCCTTGCCGGAGGGGGTCAGTAATGTGCTGGAGCTGCTGACCAATACGGAAGCATACAAC AGCTACGTGACAGCGGCCGAAAACGCCACTCCCGGTATTATCAGTGCTACCGTGAATGACATTATTGCCGATCCTGAACT CACTCCCCCCGTTTCTGCTGATAGCCTGGCAAAAACCTACTACGAGGTGTTTCCGGCGGCTCCAGGATTCCTGTCCCGTG GTGGCGGTCGATTTGACTTTAACAGCGACGGCTCCGGGGCAGAAACCTTTAGCAGGGGGGTGCATCAATTTACCTGGACA CTGACGGATGGCACTTTAACCCTGACCTACGCAGATACCATGGGCTCTTTTTATTATCCTGCTGTAGCCGTGGGGGTTGC CGGCTTAACTCAGGCGCAGGTTGACCAGCTGAATGCGGCGGGTGTGAATCAGGTTGAGGTGCAGAGCAAACCACAAAGTA CAACAATGAAACGGGTCATTGAAGGTGAGAAAACCGATACTTTTCGGATTGTTACAACTGTCAAGGAAACCATGACACCG GTAGTATTGACTGGCGGCACTACAATCACAACAGATGGTAAATTGGAGCAGCAAACCAGCGACCAACTGATGCGAAATGG TGACAAGTTGGTGGATTTCAAGTTGACGGCAGACGATGTGGTAAGCGACTGGATTTTGGAACACTACTATTACTTCGGCG ATCCAGATTATGGCTATTCGGACATGTTTGCCGATCTATTTGAGGTCAGTGCAGACGGTACCGGTGTCGCCCGCGTTCTG GAACAAAGTTTTACCTGGGTCATTGATGACAAGGGAACCTTTGTTGCCACATTTGAAGATGGCAGCAGTGTGCATATCAC TAAGCTTGATCAGTCAGGCAGCGATATACAGGTGTTCAGTGAATCTTACGATGCCGAGGGCAACTTGCTTGCCGCCGATA CCGATTATGCATTGGAGCTTGAGAATGGTGTGATTGGCACCTTTGACTTAACCAATTCAGAAGGCAAGTACTGGAATACC ACCATTAATCAATGGCGTAAATCGGCCTGGGACAACGGCAATTTGTTGTGGGATGACGGTTTCGCCTATTTTGGTTGGCA GTTTAATGCCAATGGCGAAGGTTATCAGTTGGGCAGTTTCCAATCCTCACCACCTGATTTTGCCCCCCTATTTAACACCC CAATCAACTGGATGGTTGATACCGAATCGGATGATGTGGCATTCCAGTCGATTTACCGTTGGAAGTGTGGTGATGTGACC ACCGAAGCATGCGCTCGCCGTGATTGGTATGTGCTTAAAGAGTTGGAGTTTGGTGTCGTGGGTCCACGTATTTATGTATT TGAATTTGAAGAGCGCAGAATTGATAGCCAGTCGCCTTGGTATGTTGCCAGAGGTTTGGGCCCCAGACTCAATATTTATG AAGAAATAGCCTTTGATTACTGGAACCAAACCGCAGTACCAGCTGCTTTCAGTCGTGGTATGCAGGCCAGCCGGCCTTAC GGTGCAGGGGGCACTGGCGTTGCCCGTTTGGTGTTGGAGCCAAGTCAAACCCCTGCAGTCGGATTTTAG
Upstream 100 bases:
>100_bases TGGTGAAAAGGCGAACTGATTCCTTGTAATTCGTCAATACCCATCGACTTTTCTATCCCATACCTCTCGTGTATACCCAA TAGTTCGTTAAGGAGTGACG
Downstream 100 bases:
>100_bases TTTTTTGGTGCTCGGGCAGCTCGTATAGAGTTGCCACATAGCTATTTGAGGCGTGCTCGGTTACTGAGCAGGCAAACGCC TGAAGATGAATAGTTCGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: M36 Family Peptidase; PKD Domain-Containing Protein; Chitinase; Peptidase S8 And; Glycosyl Hydrolase Family Chitinase; Chitinase A; Glycoside Hydrolase Family; NHL Repeat-Containing Protein; Protease; Protease Domain-Containing Protein
Number of amino acids: Translated: 902; Mature: 902
Protein sequence:
>902_residues MKFKNFKELSVSFVACALLAACGSDDPDEMPTVTVASSVALKENRSVDIISVGKDDGSSLSYQWTQESGPTLTLANITSA IVGVTAPNVDADGTAVLRVTVTDSANQTASATVSVLVANNQLPTVTAAFEGAVEKSAVTLTASATDPDGSISSYLWTQTS GAPVILTGETTASLSFTAPSVSADTDLGFSLMVTDDDDESASVVGTVTVTPVMVTYTVTGNVADAAFAGSEVSGTLAGTS FSTTTDSNGAFTLPLKADDDETNLFTNLMVKSSGTAGLEYYKFVPQLTADPVQAAVAGKVSSRTQVSPPAAKADTLADEG ANAVSINAVSTALYSLIVSANNGEVPADLDQFTFVEKSVSPDELIEAAAVVKLLTQGGAFALPEGVSNVLELLTNTEAYN SYVTAAENATPGIISATVNDIIADPELTPPVSADSLAKTYYEVFPAAPGFLSRGGGRFDFNSDGSGAETFSRGVHQFTWT LTDGTLTLTYADTMGSFYYPAVAVGVAGLTQAQVDQLNAAGVNQVEVQSKPQSTTMKRVIEGEKTDTFRIVTTVKETMTP VVLTGGTTITTDGKLEQQTSDQLMRNGDKLVDFKLTADDVVSDWILEHYYYFGDPDYGYSDMFADLFEVSADGTGVARVL EQSFTWVIDDKGTFVATFEDGSSVHITKLDQSGSDIQVFSESYDAEGNLLAADTDYALELENGVIGTFDLTNSEGKYWNT TINQWRKSAWDNGNLLWDDGFAYFGWQFNANGEGYQLGSFQSSPPDFAPLFNTPINWMVDTESDDVAFQSIYRWKCGDVT TEACARRDWYVLKELEFGVVGPRIYVFEFEERRIDSQSPWYVARGLGPRLNIYEEIAFDYWNQTAVPAAFSRGMQASRPY GAGGTGVARLVLEPSQTPAVGF
Sequences:
>Translated_902_residues MKFKNFKELSVSFVACALLAACGSDDPDEMPTVTVASSVALKENRSVDIISVGKDDGSSLSYQWTQESGPTLTLANITSA IVGVTAPNVDADGTAVLRVTVTDSANQTASATVSVLVANNQLPTVTAAFEGAVEKSAVTLTASATDPDGSISSYLWTQTS GAPVILTGETTASLSFTAPSVSADTDLGFSLMVTDDDDESASVVGTVTVTPVMVTYTVTGNVADAAFAGSEVSGTLAGTS FSTTTDSNGAFTLPLKADDDETNLFTNLMVKSSGTAGLEYYKFVPQLTADPVQAAVAGKVSSRTQVSPPAAKADTLADEG ANAVSINAVSTALYSLIVSANNGEVPADLDQFTFVEKSVSPDELIEAAAVVKLLTQGGAFALPEGVSNVLELLTNTEAYN SYVTAAENATPGIISATVNDIIADPELTPPVSADSLAKTYYEVFPAAPGFLSRGGGRFDFNSDGSGAETFSRGVHQFTWT LTDGTLTLTYADTMGSFYYPAVAVGVAGLTQAQVDQLNAAGVNQVEVQSKPQSTTMKRVIEGEKTDTFRIVTTVKETMTP VVLTGGTTITTDGKLEQQTSDQLMRNGDKLVDFKLTADDVVSDWILEHYYYFGDPDYGYSDMFADLFEVSADGTGVARVL EQSFTWVIDDKGTFVATFEDGSSVHITKLDQSGSDIQVFSESYDAEGNLLAADTDYALELENGVIGTFDLTNSEGKYWNT TINQWRKSAWDNGNLLWDDGFAYFGWQFNANGEGYQLGSFQSSPPDFAPLFNTPINWMVDTESDDVAFQSIYRWKCGDVT TEACARRDWYVLKELEFGVVGPRIYVFEFEERRIDSQSPWYVARGLGPRLNIYEEIAFDYWNQTAVPAAFSRGMQASRPY GAGGTGVARLVLEPSQTPAVGF >Mature_902_residues MKFKNFKELSVSFVACALLAACGSDDPDEMPTVTVASSVALKENRSVDIISVGKDDGSSLSYQWTQESGPTLTLANITSA IVGVTAPNVDADGTAVLRVTVTDSANQTASATVSVLVANNQLPTVTAAFEGAVEKSAVTLTASATDPDGSISSYLWTQTS GAPVILTGETTASLSFTAPSVSADTDLGFSLMVTDDDDESASVVGTVTVTPVMVTYTVTGNVADAAFAGSEVSGTLAGTS FSTTTDSNGAFTLPLKADDDETNLFTNLMVKSSGTAGLEYYKFVPQLTADPVQAAVAGKVSSRTQVSPPAAKADTLADEG ANAVSINAVSTALYSLIVSANNGEVPADLDQFTFVEKSVSPDELIEAAAVVKLLTQGGAFALPEGVSNVLELLTNTEAYN SYVTAAENATPGIISATVNDIIADPELTPPVSADSLAKTYYEVFPAAPGFLSRGGGRFDFNSDGSGAETFSRGVHQFTWT LTDGTLTLTYADTMGSFYYPAVAVGVAGLTQAQVDQLNAAGVNQVEVQSKPQSTTMKRVIEGEKTDTFRIVTTVKETMTP VVLTGGTTITTDGKLEQQTSDQLMRNGDKLVDFKLTADDVVSDWILEHYYYFGDPDYGYSDMFADLFEVSADGTGVARVL EQSFTWVIDDKGTFVATFEDGSSVHITKLDQSGSDIQVFSESYDAEGNLLAADTDYALELENGVIGTFDLTNSEGKYWNT TINQWRKSAWDNGNLLWDDGFAYFGWQFNANGEGYQLGSFQSSPPDFAPLFNTPINWMVDTESDDVAFQSIYRWKCGDVT TEACARRDWYVLKELEFGVVGPRIYVFEFEERRIDSQSPWYVARGLGPRLNIYEEIAFDYWNQTAVPAAFSRGMQASRPY GAGGTGVARLVLEPSQTPAVGF
Specific function: Unknown
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96148; Mature: 96148
Theoretical pI: Translated: 3.89; Mature: 3.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKNFKELSVSFVACALLAACGSDDPDEMPTVTVASSVALKENRSVDIISVGKDDGSSL CCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEEEECCCCCEEEEEECCCCCCCE SYQWTQESGPTLTLANITSAIVGVTAPNVDADGTAVLRVTVTDSANQTASATVSVLVANN EEEEECCCCCEEEEHHHHHHHHEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECC QLPTVTAAFEGAVEKSAVTLTASATDPDGSISSYLWTQTSGAPVILTGETTASLSFTAPS CCCEEEEHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEECCC VSADTDLGFSLMVTDDDDESASVVGTVTVTPVMVTYTVTGNVADAAFAGSEVSGTLAGTS CCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEEEEEEEECCCCHHHCCCCCCCCEEECCE FSTTTDSNGAFTLPLKADDDETNLFTNLMVKSSGTAGLEYYKFVPQLTADPVQAAVAGKV ECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHCCC SSRTQVSPPAAKADTLADEGANAVSINAVSTALYSLIVSANNGEVPADLDQFTFVEKSVS CCCCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCCC PDELIEAAAVVKLLTQGGAFALPEGVSNVLELLTNTEAYNSYVTAAENATPGIISATVND HHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCHHHCCEEEECCCCCCCEEEHHHHH IIADPELTPPVSADSLAKTYYEVFPAAPGFLSRGGGRFDFNSDGSGAETFSRGVHQFTWT HHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCEEEEEE LTDGTLTLTYADTMGSFYYPAVAVGVAGLTQAQVDQLNAAGVNQVEVQSKPQSTTMKRVI EECCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHH EGEKTDTFRIVTTVKETMTPVVLTGGTTITTDGKLEQQTSDQLMRNGDKLVDFKLTADDV CCCCCCEEEEEEEHHHHCCCEEEECCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHH VSDWILEHYYYFGDPDYGYSDMFADLFEVSADGTGVARVLEQSFTWVIDDKGTFVATFED HHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEECCCCEEEEECC GSSVHITKLDQSGSDIQVFSESYDAEGNLLAADTDYALELENGVIGTFDLTNSEGKYWNT CCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCEEEEECCCEEEEEEEECCCCCEECH TINQWRKSAWDNGNLLWDDGFAYFGWQFNANGEGYQLGSFQSSPPDFAPLFNTPINWMVD HHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCHHCCCCCCEEEE TESDDVAFQSIYRWKCGDVTTEACARRDWYVLKELEFGVVGPRIYVFEFEERRIDSQSPW CCCCCHHHHHHHEECCCCCCHHHHHCCCCEEEEECCCCEECCEEEEEEEHHHCCCCCCCE YVARGLGPRLNIYEEIAFDYWNQTAVPAAFSRGMQASRPYGAGGTGVARLVLEPSQTPAV EEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCC GF CC >Mature Secondary Structure MKFKNFKELSVSFVACALLAACGSDDPDEMPTVTVASSVALKENRSVDIISVGKDDGSSL CCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEEEECCCCCEEEEEECCCCCCCE SYQWTQESGPTLTLANITSAIVGVTAPNVDADGTAVLRVTVTDSANQTASATVSVLVANN EEEEECCCCCEEEEHHHHHHHHEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECC QLPTVTAAFEGAVEKSAVTLTASATDPDGSISSYLWTQTSGAPVILTGETTASLSFTAPS CCCEEEEHHHCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEECCC VSADTDLGFSLMVTDDDDESASVVGTVTVTPVMVTYTVTGNVADAAFAGSEVSGTLAGTS CCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEEEEEEEECCCCHHHCCCCCCCCEEECCE FSTTTDSNGAFTLPLKADDDETNLFTNLMVKSSGTAGLEYYKFVPQLTADPVQAAVAGKV ECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHCCC SSRTQVSPPAAKADTLADEGANAVSINAVSTALYSLIVSANNGEVPADLDQFTFVEKSVS CCCCCCCCCCCCHHHHHHCCCCEEEEHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCCC PDELIEAAAVVKLLTQGGAFALPEGVSNVLELLTNTEAYNSYVTAAENATPGIISATVND HHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCCHHHCCEEEECCCCCCCEEEHHHHH IIADPELTPPVSADSLAKTYYEVFPAAPGFLSRGGGRFDFNSDGSGAETFSRGVHQFTWT HHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCEEEEEE LTDGTLTLTYADTMGSFYYPAVAVGVAGLTQAQVDQLNAAGVNQVEVQSKPQSTTMKRVI EECCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHH EGEKTDTFRIVTTVKETMTPVVLTGGTTITTDGKLEQQTSDQLMRNGDKLVDFKLTADDV CCCCCCEEEEEEEHHHHCCCEEEECCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHH VSDWILEHYYYFGDPDYGYSDMFADLFEVSADGTGVARVLEQSFTWVIDDKGTFVATFED HHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEEECCCCEEEEECC GSSVHITKLDQSGSDIQVFSESYDAEGNLLAADTDYALELENGVIGTFDLTNSEGKYWNT CCEEEEEEECCCCCCEEEEECCCCCCCCEEEECCCEEEEECCCEEEEEEEECCCCCEECH TINQWRKSAWDNGNLLWDDGFAYFGWQFNANGEGYQLGSFQSSPPDFAPLFNTPINWMVD HHHHHHHHCCCCCCEEEECCCEEEEEEECCCCCCEEECCCCCCCCCCCHHCCCCCCEEEE TESDDVAFQSIYRWKCGDVTTEACARRDWYVLKELEFGVVGPRIYVFEFEERRIDSQSPW CCCCCHHHHHHHEECCCCCCHHHHHCCCCEEEEECCCCEECCEEEEEEEHHHCCCCCCCE YVARGLGPRLNIYEEIAFDYWNQTAVPAAFSRGMQASRPYGAGGTGVARLVLEPSQTPAV EEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCC GF CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA