| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774206
Identifier: 119774206
GI number: 119774206
Start: 1295107
End: 1295865
Strand: Direct
Name: 119774206
Synonym: Sama_1069
Alternate gene names: NA
Gene position: 1295107-1295865 (Clockwise)
Preceding gene: 119774205
Following gene: 119774207
Centisome position: 30.08
GC content: 56.65
Gene sequence:
>759_bases ATGAAAGATAGCCAACTGGTGGACACTGAACTTAAGCAGACGCTGGATGCGCTTTACCGTGAAGGTGCCAGGGAAGAGCC TCCTGAAGCGCTGGATGCGGAAATACTGGCACTGGCCGGTGCCCACCTTGCCAGCCCCAAGCCTGAAATTGTGGTGCGCC GTGGGTTAAGGCGTTTTCCTTACGCCATCTCCAGCGCGGCGTCTCTGATGTTATTGGTGGGCCTGGTGCTGCTCAACCCG CAGCAGGTGTTTTTCAATGCCGATACTGTGTTGCCTGAGACGGATATGCTGGTGGCGCCGATGGCAGACGAGGGTATGGT CAGAACTGAGATGAATGCCAACGCCCGCAATGGCGTGAGCTCAGCGCCTGACATGGCGTCCAGCCAGCCTGCCGTAAACC AACAGCCCCTGCAAATTGAACAGGGTCAGCAGCCCGAGGCTCAGACTCGCACTGCTCCGGCGGCGTTTTCTTCCCCGCCT ACGGCCACAGATGAGTCGGCCGAACCGCAAGTGGCAACAACTGCCATACTCAAATCATCGGCGAGGAAATTGGTATCGGA ACCACTGGCATTAAGACCAGATGGCCTGGCCGATACAGACGACATTGACCTGCTGCTCGCATCTTTGGAAGACACGCTCG CTGGTGGAGACAGCCAGCTAACCCTGTCGTTAATCGAGGCGTTTATTGCCAGGGAGTATGAGTTAACTGCGCCGCAGCAG CTAATATTTGACCAGCTTCAATCCCGATTGGCTGAGTGA
Upstream 100 bases:
>100_bases GAAATTGCCTCTGTATCACTGGAAGCGACCAAGAGCCGTATCCGTTATGCCTATCAGAGCCTCAAAACCTGCGTGGCCAA GCGATTGGGGGAGGATAGCG
Downstream 100 bases:
>100_bases ATCACAGCCACAACCATGTCGACAATGAAGGGGGCAAGCATGCAGGCAGTGAAAATTGGACTGGTCCTGATACTGTTTTC CTGGCCCACATTCGCGGTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MKDSQLVDTELKQTLDALYREGAREEPPEALDAEILALAGAHLASPKPEIVVRRGLRRFPYAISSAASLMLLVGLVLLNP QQVFFNADTVLPETDMLVAPMADEGMVRTEMNANARNGVSSAPDMASSQPAVNQQPLQIEQGQQPEAQTRTAPAAFSSPP TATDESAEPQVATTAILKSSARKLVSEPLALRPDGLADTDDIDLLLASLEDTLAGGDSQLTLSLIEAFIAREYELTAPQQ LIFDQLQSRLAE
Sequences:
>Translated_252_residues MKDSQLVDTELKQTLDALYREGAREEPPEALDAEILALAGAHLASPKPEIVVRRGLRRFPYAISSAASLMLLVGLVLLNP QQVFFNADTVLPETDMLVAPMADEGMVRTEMNANARNGVSSAPDMASSQPAVNQQPLQIEQGQQPEAQTRTAPAAFSSPP TATDESAEPQVATTAILKSSARKLVSEPLALRPDGLADTDDIDLLLASLEDTLAGGDSQLTLSLIEAFIAREYELTAPQQ LIFDQLQSRLAE >Mature_252_residues MKDSQLVDTELKQTLDALYREGAREEPPEALDAEILALAGAHLASPKPEIVVRRGLRRFPYAISSAASLMLLVGLVLLNP QQVFFNADTVLPETDMLVAPMADEGMVRTEMNANARNGVSSAPDMASSQPAVNQQPLQIEQGQQPEAQTRTAPAAFSSPP TATDESAEPQVATTAILKSSARKLVSEPLALRPDGLADTDDIDLLLASLEDTLAGGDSQLTLSLIEAFIAREYELTAPQQ LIFDQLQSRLAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27061; Mature: 27061
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDSQLVDTELKQTLDALYREGAREEPPEALDAEILALAGAHLASPKPEIVVRRGLRRFP CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC YAISSAASLMLLVGLVLLNPQQVFFNADTVLPETDMLVAPMADEGMVRTEMNANARNGVS HHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCC SAPDMASSQPAVNQQPLQIEQGQQPEAQTRTAPAAFSSPPTATDESAEPQVATTAILKSS CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ARKLVSEPLALRPDGLADTDDIDLLLASLEDTLAGGDSQLTLSLIEAFIAREYELTAPQQ HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH LIFDQLQSRLAE HHHHHHHHHHCC >Mature Secondary Structure MKDSQLVDTELKQTLDALYREGAREEPPEALDAEILALAGAHLASPKPEIVVRRGLRRFP CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC YAISSAASLMLLVGLVLLNPQQVFFNADTVLPETDMLVAPMADEGMVRTEMNANARNGVS HHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCC SAPDMASSQPAVNQQPLQIEQGQQPEAQTRTAPAAFSSPPTATDESAEPQVATTAILKSS CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ARKLVSEPLALRPDGLADTDDIDLLLASLEDTLAGGDSQLTLSLIEAFIAREYELTAPQQ HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHH LIFDQLQSRLAE HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA