Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774207

Identifier: 119774207

GI number: 119774207

Start: 1295905

End: 1296750

Strand: Direct

Name: 119774207

Synonym: Sama_1070

Alternate gene names: NA

Gene position: 1295905-1296750 (Clockwise)

Preceding gene: 119774206

Following gene: 119774210

Centisome position: 30.09

GC content: 54.49

Gene sequence:

>846_bases
ATGCAGGCAGTGAAAATTGGACTGGTCCTGATACTGTTTTCCTGGCCCACATTCGCGGTCCAGACGCAGACAATCTGCCA
AGCACCGCTGCATGTTGCCTACAATGACTGGCCTCCTTACTCCTGGTCCGATGAAGTTGGCGAACCATTGGGGCTGGATG
TTGACCTTTTGAAAGCCTTTGCCCGCCGGGTTGGCTGTGTACTCGAGTTTGATAAAATGCCGGCTCGTCGCTCCCATCAG
CTGATGCATCTGGGAAAGGTGGATATCATGATGGGCGCCAGTAAAACGGCAGAACGGGAGGAGTATGCCCACTTCTCGGT
GCCTTATCGACTGGAGCAGGTGGGGCTTTTCAGTATAGATAATGGCGGCGTTGTCTCTTTGGGCAGTTGGCAGCAGGTGC
TCGACAGCAGTCTTAAGCTACTGGTACCGCAGGCGGGCTGGTACGGTGAAGCGTACGAGAGTTCAAAGCGCAGCCTGGCA
ATGCACAATCAGCTGGTGGAAAGCCCTGACCTGCTCAAGAGCGTACAAATGCTGTCGCGGGGCCGTGCCGAGCTTGCCAT
TGGTGATGCACTCTCGTTGCCCTTTATTGCCAGCCAACATGAAAAAGTTCATCTGTTCCGCCATCCGCTTCGTTTAACCG
AAAGCGACATACACCTGATGTTCAGCCGCGCAACCTTCGACGAAGCCAGGGTCAGGGCTTTTAATGATGCCATTCGCGGT
GCGGCCGAGGATGGTGAAATCGCCTCCTTGCTACTCAAGTGGGAGCAAATATCCCTAAGTCGTATCGAAGGCGTATCACA
AAAGTCCAGAGGCTCGGATGAGCCCATTTGGATCCTGGCCGACTGA

Upstream 100 bases:

>100_bases
TGAGTTAACTGCGCCGCAGCAGCTAATATTTGACCAGCTTCAATCCCGATTGGCTGAGTGAATCACAGCCACAACCATGT
CGACAATGAAGGGGGCAAGC

Downstream 100 bases:

>100_bases
GTTCAATGGTTTATGTGTGCGTCAGTGCCATATTTCTCGCATGGCAGGCTCACTGAGAAAGGTATCCACCAGCAAGGGGT
CGAGAATACTGCCCTTGAGC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MQAVKIGLVLILFSWPTFAVQTQTICQAPLHVAYNDWPPYSWSDEVGEPLGLDVDLLKAFARRVGCVLEFDKMPARRSHQ
LMHLGKVDIMMGASKTAEREEYAHFSVPYRLEQVGLFSIDNGGVVSLGSWQQVLDSSLKLLVPQAGWYGEAYESSKRSLA
MHNQLVESPDLLKSVQMLSRGRAELAIGDALSLPFIASQHEKVHLFRHPLRLTESDIHLMFSRATFDEARVRAFNDAIRG
AAEDGEIASLLLKWEQISLSRIEGVSQKSRGSDEPIWILAD

Sequences:

>Translated_281_residues
MQAVKIGLVLILFSWPTFAVQTQTICQAPLHVAYNDWPPYSWSDEVGEPLGLDVDLLKAFARRVGCVLEFDKMPARRSHQ
LMHLGKVDIMMGASKTAEREEYAHFSVPYRLEQVGLFSIDNGGVVSLGSWQQVLDSSLKLLVPQAGWYGEAYESSKRSLA
MHNQLVESPDLLKSVQMLSRGRAELAIGDALSLPFIASQHEKVHLFRHPLRLTESDIHLMFSRATFDEARVRAFNDAIRG
AAEDGEIASLLLKWEQISLSRIEGVSQKSRGSDEPIWILAD
>Mature_281_residues
MQAVKIGLVLILFSWPTFAVQTQTICQAPLHVAYNDWPPYSWSDEVGEPLGLDVDLLKAFARRVGCVLEFDKMPARRSHQ
LMHLGKVDIMMGASKTAEREEYAHFSVPYRLEQVGLFSIDNGGVVSLGSWQQVLDSSLKLLVPQAGWYGEAYESSKRSLA
MHNQLVESPDLLKSVQMLSRGRAELAIGDALSLPFIASQHEKVHLFRHPLRLTESDIHLMFSRATFDEARVRAFNDAIRG
AAEDGEIASLLLKWEQISLSRIEGVSQKSRGSDEPIWILAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31474; Mature: 31474

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVKIGLVLILFSWPTFAVQTQTICQAPLHVAYNDWPPYSWSDEVGEPLGLDVDLLKAF
CCCHHEEEEEEEECCCCCEEEHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCHHHHHHH
ARRVGCVLEFDKMPARRSHQLMHLGKVDIMMGASKTAEREEYAHFSVPYRLEQVGLFSID
HHHHCEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCEEEEEEEEEEEC
NGGVVSLGSWQQVLDSSLKLLVPQAGWYGEAYESSKRSLAMHNQLVESPDLLKSVQMLSR
CCCEEEECCHHHHHHCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
GRAELAIGDALSLPFIASQHEKVHLFRHPLRLTESDIHLMFSRATFDEARVRAFNDAIRG
CCCEEEECCCCCCCCCCCCCCEEHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
AAEDGEIASLLLKWEQISLSRIEGVSQKSRGSDEPIWILAD
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEC
>Mature Secondary Structure
MQAVKIGLVLILFSWPTFAVQTQTICQAPLHVAYNDWPPYSWSDEVGEPLGLDVDLLKAF
CCCHHEEEEEEEECCCCCEEEHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCHHHHHHH
ARRVGCVLEFDKMPARRSHQLMHLGKVDIMMGASKTAEREEYAHFSVPYRLEQVGLFSID
HHHHCEEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCEEEEEEEEEEEC
NGGVVSLGSWQQVLDSSLKLLVPQAGWYGEAYESSKRSLAMHNQLVESPDLLKSVQMLSR
CCCEEEECCHHHHHHCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
GRAELAIGDALSLPFIASQHEKVHLFRHPLRLTESDIHLMFSRATFDEARVRAFNDAIRG
CCCEEEECCCCCCCCCCCCCCEEHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC
AAEDGEIASLLLKWEQISLSRIEGVSQKSRGSDEPIWILAD
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA