Click here to switch to the map view.

The map label for this gene is sigK [H]

Identifier: 119774205

GI number: 119774205

Start: 1294521

End: 1295117

Strand: Direct

Name: sigK [H]

Synonym: Sama_1068

Alternate gene names: 119774205

Gene position: 1294521-1295117 (Clockwise)

Preceding gene: 119774197

Following gene: 119774206

Centisome position: 30.06

GC content: 54.1

Gene sequence:

>597_bases
ATGACAGCAACGCAATCCATTTCATTGGTGGGTGGTGAGGGCGACGAACTGCTGATGCAGCGTTATGCCTCCGGGGACAT
TCAGGCCTTCGACACCCTTTATCGTCGCCACAAAGGCGGGTTATACCGCTACTTTTTACGCCAGATTGGTGACAGCCAGC
TGGCGGAAGATCTCTATCAGGAAACCTGGGGCCGGGTGATAAAAGCGGCGCCTGCTTACGAAATCAGCGCCAAGTTTACC
ACCTGGCTTTACCGTATCGCCCATAACCTGCTGATTGACCATGTGCGGGCTGTTAAACCGTTGAACGAAGCCGACACCCT
GGATGAAGAAGGGATGGCGCTGACAGACTCGATGACTCCGGTGCGAAGTCATGAGCACGACCTTAAGGTGCAGGCCCTGA
AACACTGCGTTGGCCTGCTGCCCCAGGTTCAGAAAGAAGCCTTCCTGCTCTCCAGCGAGATGGGATTTACTGCGCTGATG
ATAAGTGAAATTGCCTCTGTATCACTGGAAGCGACCAAGAGCCGTATCCGTTATGCCTATCAGAGCCTCAAAACCTGCGT
GGCCAAGCGATTGGGGGAGGATAGCGATGAAAGATAG

Upstream 100 bases:

>100_bases
GGACTTTGTGGCAGTGGCTGTGCACACTGAGTACAGGTGCAATCAAGGTTGGGAAACACGGGCTGAATGCCACTGGTTTG
TCTCAACCATCAGGGCAATC

Downstream 100 bases:

>100_bases
CCAACTGGTGGACACTGAACTTAAGCAGACGCTGGATGCGCTTTACCGTGAAGGTGCCAGGGAAGAGCCTCCTGAAGCGC
TGGATGCGGAAATACTGGCA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTATQSISLVGGEGDELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQETWGRVIKAAPAYEISAKFT
TWLYRIAHNLLIDHVRAVKPLNEADTLDEEGMALTDSMTPVRSHEHDLKVQALKHCVGLLPQVQKEAFLLSSEMGFTALM
ISEIASVSLEATKSRIRYAYQSLKTCVAKRLGEDSDER

Sequences:

>Translated_198_residues
MTATQSISLVGGEGDELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQETWGRVIKAAPAYEISAKFT
TWLYRIAHNLLIDHVRAVKPLNEADTLDEEGMALTDSMTPVRSHEHDLKVQALKHCVGLLPQVQKEAFLLSSEMGFTALM
ISEIASVSLEATKSRIRYAYQSLKTCVAKRLGEDSDER
>Mature_197_residues
TATQSISLVGGEGDELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQETWGRVIKAAPAYEISAKFTT
WLYRIAHNLLIDHVRAVKPLNEADTLDEEGMALTDSMTPVRSHEHDLKVQALKHCVGLLPQVQKEAFLLSSEMGFTALMI
SEIASVSLEATKSRIRYAYQSLKTCVAKRLGEDSDER

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22333; Mature: 22202

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATQSISLVGGEGDELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQ
CCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHH
ETWGRVIKAAPAYEISAKFTTWLYRIAHNLLIDHVRAVKPLNEADTLDEEGMALTDSMTP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEECCCCCC
VRSHEHDLKVQALKHCVGLLPQVQKEAFLLSSEMGFTALMISEIASVSLEATKSRIRYAY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QSLKTCVAKRLGEDSDER
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TATQSISLVGGEGDELLMQRYASGDIQAFDTLYRRHKGGLYRYFLRQIGDSQLAEDLYQ
CCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHH
ETWGRVIKAAPAYEISAKFTTWLYRIAHNLLIDHVRAVKPLNEADTLDEEGMALTDSMTP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCEECCCCCC
VRSHEHDLKVQALKHCVGLLPQVQKEAFLLSSEMGFTALMISEIASVSLEATKSRIRYAY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QSLKTCVAKRLGEDSDER
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA