| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is surE
Identifier: 119774178
GI number: 119774178
Start: 1259170
End: 1259916
Strand: Direct
Name: surE
Synonym: Sama_1041
Alternate gene names: 119774178
Gene position: 1259170-1259916 (Clockwise)
Preceding gene: 119774177
Following gene: 119774179
Centisome position: 29.24
GC content: 54.62
Gene sequence:
>747_bases ATGCGCCTGCTGGTGAGTAACGATGATGGTGTGTATGCCCCGGGTATCAAGGCGCTGGCCGAGGCATTAAAGACCATTGC TCATGTGGATGTGGTGGCACCGGACAGAAACTGCTCCGCCGCCAGTAACTCGCTGACCTTGACTAATCCATTGAGAATTA ATAGGTTAGACAATGGTTATATTGCGGTTAACGGCACGCCATCGGACTGTGTGCATATCGCCATTCGCGAAATTTGCACC GAAGAGCCTGAGTTGGTGGTATCGGGTATTAACGCTGGAGCGAATATGGGAGATGACACCCTGTATTCCGGCACTGTGGC TGCGGCCATGGAGGGGCGCTTTCAGGGCCTGCCAGCTATCGCTGTGTCCCTGTCGGCCCGTACCCCTGTGCACTATGATG CGGCTGCACAAATTGCACTGCGCATCGTTGAAGGATTGAAGGCACATCCATTGCCAGCGGACCAAATTCTTAATGTGAAC GTGCCTGATTTGCCTCTTGAGGAAATCAAGGGCATCAAGGTGACTCGTCTTGGGGCGCGTCACAGGGCCGAAGGTGTGGT AAGAACCACCGACCCTGCTGGTCGGGAAATTTTCTGGCTCGGTCCACCGGGTGAGGAGCTGGATGCCAGCGAAGGCACCG ACTTTGGTGCCGTGGCTGAAGGCTATGTGTCCATCACGCCGTTAACCGTCGACCTGACCGCACACAGTCAACTTAACGCA CTGGCAAACTGGATAGAAAAGATATGA
Upstream 100 bases:
>100_bases TTTGCCACCAGTGTGCTCAGAGAGCTTTGCGAGTACACAGATATAAAAGAGCTGGAGTGGCGCCGGGCGGTGGCCGAGCG TGATGCGCGGGAGGGCGACA
Downstream 100 bases:
>100_bases ACCAGACCGGCTCGACGGTGGCAATCAACCTTGCAAAGAAGTTGTATGACGCTGGGATCCGCGACAACCTCGTTTTGCAG GCCATCGCCAACACGCCCCG
Product: stationary phase survival protein SurE
Products: NA
Alternate protein names: Nucleoside 5'-monophosphate phosphohydrolase
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MRLLVSNDDGVYAPGIKALAEALKTIAHVDVVAPDRNCSAASNSLTLTNPLRINRLDNGYIAVNGTPSDCVHIAIREICT EEPELVVSGINAGANMGDDTLYSGTVAAAMEGRFQGLPAIAVSLSARTPVHYDAAAQIALRIVEGLKAHPLPADQILNVN VPDLPLEEIKGIKVTRLGARHRAEGVVRTTDPAGREIFWLGPPGEELDASEGTDFGAVAEGYVSITPLTVDLTAHSQLNA LANWIEKI
Sequences:
>Translated_248_residues MRLLVSNDDGVYAPGIKALAEALKTIAHVDVVAPDRNCSAASNSLTLTNPLRINRLDNGYIAVNGTPSDCVHIAIREICT EEPELVVSGINAGANMGDDTLYSGTVAAAMEGRFQGLPAIAVSLSARTPVHYDAAAQIALRIVEGLKAHPLPADQILNVN VPDLPLEEIKGIKVTRLGARHRAEGVVRTTDPAGREIFWLGPPGEELDASEGTDFGAVAEGYVSITPLTVDLTAHSQLNA LANWIEKI >Mature_248_residues MRLLVSNDDGVYAPGIKALAEALKTIAHVDVVAPDRNCSAASNSLTLTNPLRINRLDNGYIAVNGTPSDCVHIAIREICT EEPELVVSGINAGANMGDDTLYSGTVAAAMEGRFQGLPAIAVSLSARTPVHYDAAAQIALRIVEGLKAHPLPADQILNVN VPDLPLEEIKGIKVTRLGARHRAEGVVRTTDPAGREIFWLGPPGEELDASEGTDFGAVAEGYVSITPLTVDLTAHSQLNA LANWIEKI
Specific function: Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
COG id: COG0496
COG function: function code R; Predicted acid phosphatase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surE nucleotidase family
Homologues:
Organism=Escherichia coli, GI1789101, Length=249, Percent_Identity=57.429718875502, Blast_Score=286, Evalue=1e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SURE_SHEAM (A1S4E2)
Other databases:
- EMBL: CP000507 - RefSeq: YP_926918.1 - ProteinModelPortal: A1S4E2 - SMR: A1S4E2 - STRING: A1S4E2 - GeneID: 4603293 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_1041 - NMPDR: fig|326297.7.peg.981 - eggNOG: COG0496 - HOGENOM: HBG600532 - OMA: NGFYYVN - PhylomeDB: A1S4E2 - ProtClustDB: PRK00346 - GO: GO:0005737 - HAMAP: MF_00060 - InterPro: IPR002828 - Gene3D: G3DSA:3.40.1210.10 - TIGRFAMs: TIGR00087
Pfam domain/function: PF01975 SurE; SSF64167 SurE-like_Pase/nucleotidase
EC number: =3.1.3.5
Molecular weight: Translated: 26214; Mature: 26214
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLVSNDDGVYAPGIKALAEALKTIAHVDVVAPDRNCSAASNSLTLTNPLRINRLDNGY CEEEEECCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEECCEEEEEECCCE IAVNGTPSDCVHIAIREICTEEPELVVSGINAGANMGDDTLYSGTVAAAMEGRFQGLPAI EEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEECCCHHHHHCCCCCCCCEE AVSLSARTPVHYDAAAQIALRIVEGLKAHPLPADQILNVNVPDLPLEEIKGIKVTRLGAR EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCHHHHCCEEEEECCCH HRAEGVVRTTDPAGREIFWLGPPGEELDASEGTDFGAVAEGYVSITPLTVDLTAHSQLNA HHCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHCCCEEEEEEEEEEEECCHHHHH LANWIEKI HHHHHHCC >Mature Secondary Structure MRLLVSNDDGVYAPGIKALAEALKTIAHVDVVAPDRNCSAASNSLTLTNPLRINRLDNGY CEEEEECCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEEECCEEEEEECCCE IAVNGTPSDCVHIAIREICTEEPELVVSGINAGANMGDDTLYSGTVAAAMEGRFQGLPAI EEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEECCCHHHHHCCCCCCCCEE AVSLSARTPVHYDAAAQIALRIVEGLKAHPLPADQILNVNVPDLPLEEIKGIKVTRLGAR EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCHHHHCCEEEEECCCH HRAEGVVRTTDPAGREIFWLGPPGEELDASEGTDFGAVAEGYVSITPLTVDLTAHSQLNA HHCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHCCCEEEEEEEEEEEECCHHHHH LANWIEKI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA