| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774002
Identifier: 119774002
GI number: 119774002
Start: 1056627
End: 1057394
Strand: Direct
Name: 119774002
Synonym: Sama_0865
Alternate gene names: NA
Gene position: 1056627-1057394 (Clockwise)
Preceding gene: 119774001
Following gene: 119774003
Centisome position: 24.54
GC content: 55.99
Gene sequence:
>768_bases GTGGCGCTGGGGGCCTTTGTTGGCTTTATGGCGGGGCTGCTGGGCATAGGCGGTGGACTCATGATAGTGCCGGCACTGCT TTACTTGCTGCCAGGCGTTGGATTTTCTGCCGATTATTTGCCACATGTTGCTATTGCGACTTCCCTGTCGGCCATCATTT TAACTTCCATCTCCTCGGCCCGGGCACACCACGGCCGAGGTAATATTGATTTTCAACTGCTTAAGATATTGGCCCCCGCC GTTTTACTGGGTGCGTTGGTTTCGGGGTTTGTTGCTGAACAAATTCCGGCGGAACAGCTCAGGCAAGCTTTCGCCATCTT CGTGATCCTGATGGCTGTGCAAATGGCTTTTCCCTTCAATGCCGCTGCGGCCAAACCCATGCCAAATGGGGGGCTGATAT TTATCGCCGTGTTTTTTGTCGCCTTACTGGCCGGGTTGATGGGCATTGGTGGTGGGGTGCTGCTGGTGCCCCTGATGATG TATTTTGGCGTGGCCATGCGCACTGCAGTGGGCGTGTCGGCGGCAACAGGCCTGCTTATTGCGGTGTCCGGCAGTGTCAG TTATGTGCTGGCCGGTTGGAACACCCAGGGAATGCCTGACTTTACCCTGGGGTACGTGTATCTGCCTGCCTTGCTAGGCA TAGTGTCTACCTCGATGCTGACCGCTCCTTTGGGGGCCAAAGCCGCCAGCACCTGGCCAACAGCCGTGCTCAAGAAAATT TTTGCCGTGCTGTTAACCCTGATTGGTCTGCGTCTGGTGATGGGGTGA
Upstream 100 bases:
>100_bases AATTTAGCATCCCGGACGCGAATGTTTTAAGCTATCGGCCCATCATGGAAATCGGCAAGGTTTAAGTGTGGAACAAATAC TTTGGGTGATTGGTTGTTGT
Downstream 100 bases:
>100_bases ACTTTTTCAGCCTACTCAACTCGGTTACCCCGGAACTGACATGCCATTGAATTTTCCCGATATAGATCCAGTCATTGCCA AGTTTGGGCCCTTTGAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSARAHHGRGNIDFQLLKILAPA VLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFNAAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMM YFGVAMRTAVGVSAATGLLIAVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI FAVLLTLIGLRLVMG
Sequences:
>Translated_255_residues MALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSARAHHGRGNIDFQLLKILAPA VLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFNAAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMM YFGVAMRTAVGVSAATGLLIAVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI FAVLLTLIGLRLVMG >Mature_254_residues ALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSARAHHGRGNIDFQLLKILAPAV LLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFNAAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMMY FGVAMRTAVGVSAATGLLIAVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKIF AVLLTLIGLRLVMG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0721 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002781 [H]
Pfam domain/function: PF01925 DUF81 [H]
EC number: NA
Molecular weight: Translated: 26135; Mature: 26004
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSA CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RAHHGRGNIDFQLLKILAPAVLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFN HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC AAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMMYFGVAMRTAVGVSAATGLLI CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEE AVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI EECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH FAVLLTLIGLRLVMG HHHHHHHHHHHHHCC >Mature Secondary Structure ALGAFVGFMAGLLGIGGGLMIVPALLYLLPGVGFSADYLPHVAIATSLSAIILTSISSA CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RAHHGRGNIDFQLLKILAPAVLLGALVSGFVAEQIPAEQLRQAFAIFVILMAVQMAFPFN HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC AAAAKPMPNGGLIFIAVFFVALLAGLMGIGGGVLLVPLMMYFGVAMRTAVGVSAATGLLI CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEE AVSGSVSYVLAGWNTQGMPDFTLGYVYLPALLGIVSTSMLTAPLGAKAASTWPTAVLKKI EECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH FAVLLTLIGLRLVMG HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]