| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ptsP [H]
Identifier: 119774001
GI number: 119774001
Start: 1054294
End: 1056528
Strand: Direct
Name: ptsP [H]
Synonym: Sama_0864
Alternate gene names: 119774001
Gene position: 1054294-1056528 (Clockwise)
Preceding gene: 119774000
Following gene: 119774002
Centisome position: 24.48
GC content: 56.87
Gene sequence:
>2235_bases GTGCTCAATACGCTCAGGGATATCACACAATCGGTGGCGTCGGCCCATACCCTCGAGTTGGCACTCGAGTCCCTGGTGGG CCAGACCAAGGCCGCCATGGAAACAGAGTGTTGTTCCATCTATATCCTCGAACAACAACAATTGGTGTTGTCTGCCACCG ATGGGCTTGAAAAATCCGCCGTGGGCCGGGTCAAGATGCCGCTCAGCGAAGGGCTTGTTGGCCTGGTCGCCCAGCGTGAA GAAGCCATTAACCTCGCCGACGCCCATCTGCATCCCAGATTCAAGCTGTTCCCTGAGGCCAACGAAGACGAATACCGCGC TTTTTTGGCCGCCCCCATCATTTATCAAAAACAGTTACTTGGCGTTATTGTGGTGCAGCAGGCAAAGGCACGTCAGTTTA ATGAGGGTGAAGAAGCCTTCCTGATGACGCTCGCCGCGCAGCTTGCCATGGCCATTCGGGGCCTGAAACGGCGCGCAGAA GTGCATTCACTGGATCATCAGGTGCTGTTCACTGGCACCAGTGCCTCCACGGGTGTTGCCATTGCCCATGCCCTGGTCAT CGGCGGCGAAATCTCCCTGGAACAACCCGAAGCCTGTGCGACCGATGTGGACGCAGAGGTGAATCGGTTACGCCTGGCCA TGGGACGCAGTCGTGATGCCTTAACGGCTTTGGCGCAAAAGTTTGAAAATGACCATGATGATGAGCTGAGCTCCATCTTC ACGTCGCTGCAGTCCTTACTGGAAGACGCAAGCCTTGGTGGTGAATATCAGCGAGAAGTGCTGGCTGGTTGGAGCGCTGA AACCGCGGTGAGCAGGGTGTCGCTGCGCTACGTGGCTCAGTTTGAAACCATGGAAGATGCTTATCTTCGTGAACGGGCGA GCGATATCCGGGATTTGGGGCAGAGAGTACTGCGCCAACTGATTGAGCCCGGCCGCATGATGCTCGATCCCGATAAGCCC GTTATCCTGGTGACCCGTGAAGCCGACACCAGCATGCTGGCCGAGTTTCCGAGGCAAAAGCTGGCCGGGATAGTGACAGA AGCCGGTGGGGTTAACTCCCATGCGGCCATCCTGGCCAGAGCGTTGGGCGTACCTGCCATCATGGGGGTCGAGCAGGTGT TGCAGGCCAATCTGGATAAGCAACTTCTGGTACTCAACGCCAGTCGCGGTATCTTAATGGTTTCGCCGTCGCCGACCGTG GTGGACGAGTATCGCAATCTTATCAGTGCCCAAAAGGCCCTCGATCGTCAGTACGCCGAGGAGCTGAAAGAGCCCGCCTT GACCCTGGACGGTCATCGTATACATCTGTATCTCAATGCGGGACTCATGAGCGGCGTGTCGAGCGAAATTGCCGATGGCG CAGATGGTGTTGGGCTATACCGCACCGAAATCCCCTTTATGTTGCAGCAGCGTTTCCCCAGTGAGTCCGAGCAGATAAAG GTGTATCGCAGCGTGTTGCAGTCGGCCGCCGGTCGGCCCGTGGTGATGCGAACTCTGGATGTGGGGGGGGATAAGCCGCT GCCCTATTTTCCAATCTCCGAAGAAAATCCTTTCCTGGGCTGGCGGGGTATTCGTCTGTCGCTGGATCATCCCGAACTGT TCCTGGTGCAACTAAGAGCCATGCTGCAGGCGGCTGGCGACACCGACAACCTGAAAATTTTGCTGCCTATGGTGAGCAGT CTCGATGAGATAGATGAGGCGCTGCTGTACCTGGACCAGGCGTTCAGTGAACTTAGGGCAGACGTTAACCCATCACTGGC ACGCCCTCCCGTTGGGGTGATGCTGGAAGTCCCGGCGCTGCTGTACCAGCTCAGAGAAGTTGCCCAACGGGTCGAGTTTG TCTCTGTGGGCAGCAACGACCTGACCCAATATTTGTTGGCGGTTGACAGAAACAACCCCCGCGTCAGTAGCCTGTATGAT TCATATCACCCTGGCGTTTTGCGGGCGTTGCAGCTGGCGTTGCAGGAATGTCGCCAGCATAAGTTGGATGTGAGTGTGTG CGGTGAGCTTGCCGGTGAGCCCATGGGCGCGCTGCTGCTGGTGGCCATGGGCTATGACGAACTGTCCATGAACCAGGGGA GTCTTGCCAAAATAAATTACCTGCTGCGACGCGTTGAGCGCAGCGAGCTGGAGCAGTTGCTTGCACTGGTGATGCAAATG TCCAATGGGCAGGATGTGCGTGAACTGGTGCGTGAATATCTCGATACGCGGGAACTGAGCTCCATCCTGGGATAA
Upstream 100 bases:
>100_bases TGTGGCACTGGCGCTGCAGGCAAGGGAAATTCCACGGGGTAAGCGAAACAGAGGGCGGTAATCTTAACGGCGTGTCTGAA AATCGGGGGAGATAAAGGCA
Downstream 100 bases:
>100_bases TTTAGCATCCCGGACGCGAATGTTTTAAGCTATCGGCCCATCATGGAAATCGGCAAGGTTTAAGTGTGGAACAAATACTT TGGGTGATTGGTTGTTGTGT
Product: phosphoenolpyruvate-protein phosphotransferase PtsP
Products: NA
Alternate protein names: Enzyme I-Ntr; Phosphotransferase system, enzyme I [H]
Number of amino acids: Translated: 744; Mature: 744
Protein sequence:
>744_residues MLNTLRDITQSVASAHTLELALESLVGQTKAAMETECCSIYILEQQQLVLSATDGLEKSAVGRVKMPLSEGLVGLVAQRE EAINLADAHLHPRFKLFPEANEDEYRAFLAAPIIYQKQLLGVIVVQQAKARQFNEGEEAFLMTLAAQLAMAIRGLKRRAE VHSLDHQVLFTGTSASTGVAIAHALVIGGEISLEQPEACATDVDAEVNRLRLAMGRSRDALTALAQKFENDHDDELSSIF TSLQSLLEDASLGGEYQREVLAGWSAETAVSRVSLRYVAQFETMEDAYLRERASDIRDLGQRVLRQLIEPGRMMLDPDKP VILVTREADTSMLAEFPRQKLAGIVTEAGGVNSHAAILARALGVPAIMGVEQVLQANLDKQLLVLNASRGILMVSPSPTV VDEYRNLISAQKALDRQYAEELKEPALTLDGHRIHLYLNAGLMSGVSSEIADGADGVGLYRTEIPFMLQQRFPSESEQIK VYRSVLQSAAGRPVVMRTLDVGGDKPLPYFPISEENPFLGWRGIRLSLDHPELFLVQLRAMLQAAGDTDNLKILLPMVSS LDEIDEALLYLDQAFSELRADVNPSLARPPVGVMLEVPALLYQLREVAQRVEFVSVGSNDLTQYLLAVDRNNPRVSSLYD SYHPGVLRALQLALQECRQHKLDVSVCGELAGEPMGALLLVAMGYDELSMNQGSLAKINYLLRRVERSELEQLLALVMQM SNGQDVRELVREYLDTRELSSILG
Sequences:
>Translated_744_residues MLNTLRDITQSVASAHTLELALESLVGQTKAAMETECCSIYILEQQQLVLSATDGLEKSAVGRVKMPLSEGLVGLVAQRE EAINLADAHLHPRFKLFPEANEDEYRAFLAAPIIYQKQLLGVIVVQQAKARQFNEGEEAFLMTLAAQLAMAIRGLKRRAE VHSLDHQVLFTGTSASTGVAIAHALVIGGEISLEQPEACATDVDAEVNRLRLAMGRSRDALTALAQKFENDHDDELSSIF TSLQSLLEDASLGGEYQREVLAGWSAETAVSRVSLRYVAQFETMEDAYLRERASDIRDLGQRVLRQLIEPGRMMLDPDKP VILVTREADTSMLAEFPRQKLAGIVTEAGGVNSHAAILARALGVPAIMGVEQVLQANLDKQLLVLNASRGILMVSPSPTV VDEYRNLISAQKALDRQYAEELKEPALTLDGHRIHLYLNAGLMSGVSSEIADGADGVGLYRTEIPFMLQQRFPSESEQIK VYRSVLQSAAGRPVVMRTLDVGGDKPLPYFPISEENPFLGWRGIRLSLDHPELFLVQLRAMLQAAGDTDNLKILLPMVSS LDEIDEALLYLDQAFSELRADVNPSLARPPVGVMLEVPALLYQLREVAQRVEFVSVGSNDLTQYLLAVDRNNPRVSSLYD SYHPGVLRALQLALQECRQHKLDVSVCGELAGEPMGALLLVAMGYDELSMNQGSLAKINYLLRRVERSELEQLLALVMQM SNGQDVRELVREYLDTRELSSILG >Mature_744_residues MLNTLRDITQSVASAHTLELALESLVGQTKAAMETECCSIYILEQQQLVLSATDGLEKSAVGRVKMPLSEGLVGLVAQRE EAINLADAHLHPRFKLFPEANEDEYRAFLAAPIIYQKQLLGVIVVQQAKARQFNEGEEAFLMTLAAQLAMAIRGLKRRAE VHSLDHQVLFTGTSASTGVAIAHALVIGGEISLEQPEACATDVDAEVNRLRLAMGRSRDALTALAQKFENDHDDELSSIF TSLQSLLEDASLGGEYQREVLAGWSAETAVSRVSLRYVAQFETMEDAYLRERASDIRDLGQRVLRQLIEPGRMMLDPDKP VILVTREADTSMLAEFPRQKLAGIVTEAGGVNSHAAILARALGVPAIMGVEQVLQANLDKQLLVLNASRGILMVSPSPTV VDEYRNLISAQKALDRQYAEELKEPALTLDGHRIHLYLNAGLMSGVSSEIADGADGVGLYRTEIPFMLQQRFPSESEQIK VYRSVLQSAAGRPVVMRTLDVGGDKPLPYFPISEENPFLGWRGIRLSLDHPELFLVQLRAMLQAAGDTDNLKILLPMVSS LDEIDEALLYLDQAFSELRADVNPSLARPPVGVMLEVPALLYQLREVAQRVEFVSVGSNDLTQYLLAVDRNNPRVSSLYD SYHPGVLRALQLALQECRQHKLDVSVCGELAGEPMGALLLVAMGYDELSMNQGSLAKINYLLRRVERSELEQLLALVMQM SNGQDVRELVREYLDTRELSSILG
Specific function: Component of the phosphoenolpyruvate-dependent nitrogen- metabolic phosphotransferase system (nitrogen-metabolic PTS), that seems to be involved in regulating nitrogen metabolism. Enzyme I- Ntr transfers the phosphoryl group from phosphoenolpyruvate (PEP)
COG id: COG3605
COG function: function code T; Signal transduction protein containing GAF and PtsI domains
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GAF domain [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=746, Percent_Identity=43.5656836461126, Blast_Score=585, Evalue=1e-168, Organism=Escherichia coli, GI1788756, Length=591, Percent_Identity=33.1641285956007, Blast_Score=314, Evalue=1e-86, Organism=Escherichia coli, GI48994992, Length=515, Percent_Identity=33.9805825242718, Blast_Score=290, Evalue=2e-79, Organism=Escherichia coli, GI1788726, Length=543, Percent_Identity=34.0699815837937, Blast_Score=271, Evalue=1e-73, Organism=Escherichia coli, GI1787994, Length=200, Percent_Identity=28, Blast_Score=66, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003018 - InterPro: IPR008279 - InterPro: IPR006318 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR008731 - InterPro: IPR015813 [H]
Pfam domain/function: PF01590 GAF; PF05524 PEP-utilisers_N; PF00391 PEP-utilizers; PF02896 PEP-utilizers_C [H]
EC number: =2.7.3.9 [H]
Molecular weight: Translated: 81975; Mature: 81975
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNTLRDITQSVASAHTLELALESLVGQTKAAMETECCSIYILEQQQLVLSATDGLEKSA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCCHHC VGRVKMPLSEGLVGLVAQREEAINLADAHLHPRFKLFPEANEDEYRAFLAAPIIYQKQLL CCCEECCHHHHHHHHHHHHHHHHCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH GVIVVQQAKARQFNEGEEAFLMTLAAQLAMAIRGLKRRAEVHSLDHQVLFTGTSASTGVA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH IAHALVIGGEISLEQPEACATDVDAEVNRLRLAMGRSRDALTALAQKFENDHDDELSSIF HHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH TSLQSLLEDASLGGEYQREVLAGWSAETAVSRVSLRYVAQFETMEDAYLRERASDIRDLG HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRVLRQLIEPGRMMLDPDKPVILVTREADTSMLAEFPRQKLAGIVTEAGGVNSHAAILAR HHHHHHHHCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH ALGVPAIMGVEQVLQANLDKQLLVLNASRGILMVSPSPTVVDEYRNLISAQKALDRQYAE HHCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH ELKEPALTLDGHRIHLYLNAGLMSGVSSEIADGADGVGLYRTEIPFMLQQRFPSESEQIK HHCCCCEEECCCEEEEEEECHHHHCHHHHHCCCCCCCCEEHHHCHHHHHHHCCCCHHHHH VYRSVLQSAAGRPVVMRTLDVGGDKPLPYFPISEENPFLGWRGIRLSLDHPELFLVQLRA HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHH MLQAAGDTDNLKILLPMVSSLDEIDEALLYLDQAFSELRADVNPSLARPPVGVMLEVPAL HHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH LYQLREVAQRVEFVSVGSNDLTQYLLAVDRNNPRVSSLYDSYHPGVLRALQLALQECRQH HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH KLDVSVCGELAGEPMGALLLVAMGYDELSMNQGSLAKINYLLRRVERSELEQLLALVMQM CCCHHHHHHHCCCCHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SNGQDVRELVREYLDTRELSSILG CCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLNTLRDITQSVASAHTLELALESLVGQTKAAMETECCSIYILEQQQLVLSATDGLEKSA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCCHHC VGRVKMPLSEGLVGLVAQREEAINLADAHLHPRFKLFPEANEDEYRAFLAAPIIYQKQLL CCCEECCHHHHHHHHHHHHHHHHCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH GVIVVQQAKARQFNEGEEAFLMTLAAQLAMAIRGLKRRAEVHSLDHQVLFTGTSASTGVA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH IAHALVIGGEISLEQPEACATDVDAEVNRLRLAMGRSRDALTALAQKFENDHDDELSSIF HHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH TSLQSLLEDASLGGEYQREVLAGWSAETAVSRVSLRYVAQFETMEDAYLRERASDIRDLG HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRVLRQLIEPGRMMLDPDKPVILVTREADTSMLAEFPRQKLAGIVTEAGGVNSHAAILAR HHHHHHHHCCCCEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH ALGVPAIMGVEQVLQANLDKQLLVLNASRGILMVSPSPTVVDEYRNLISAQKALDRQYAE HHCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH ELKEPALTLDGHRIHLYLNAGLMSGVSSEIADGADGVGLYRTEIPFMLQQRFPSESEQIK HHCCCCEEECCCEEEEEEECHHHHCHHHHHCCCCCCCCEEHHHCHHHHHHHCCCCHHHHH VYRSVLQSAAGRPVVMRTLDVGGDKPLPYFPISEENPFLGWRGIRLSLDHPELFLVQLRA HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHH MLQAAGDTDNLKILLPMVSSLDEIDEALLYLDQAFSELRADVNPSLARPPVGVMLEVPAL HHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH LYQLREVAQRVEFVSVGSNDLTQYLLAVDRNNPRVSSLYDSYHPGVLRALQLALQECRQH HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH KLDVSVCGELAGEPMGALLLVAMGYDELSMNQGSLAKINYLLRRVERSELEQLLALVMQM CCCHHHHHHHCCCCHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SNGQDVRELVREYLDTRELSSILG CCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 7896715; 8973315 [H]