Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773691

Identifier: 119773691

GI number: 119773691

Start: 677767

End: 678540

Strand: Direct

Name: 119773691

Synonym: Sama_0551

Alternate gene names: NA

Gene position: 677767-678540 (Clockwise)

Preceding gene: 119773690

Following gene: 119773692

Centisome position: 15.74

GC content: 46.25

Gene sequence:

>774_bases
ATGAATCGAAGAGCTTTATCCACATTGCAGCGCTTTATGGCGGTGCTGTGTCTCTGCGGAGCGGCCTGCATAGCCAAAAC
AGAGGAGCTACGTACTGTAACCATGGCTGTGAGTGATTCTATTGCACCATTTTTTATTGATTCACAGCATGGTCTGCAGT
ACGAGCTATTGGAGGCGATATTGCAACATGCTCACTTTCGTCTGAATGAAGTTAAGCTGGCCCCCAATTATCGTGCCCGA
CGTTGGCTTGAAAATGGTGAGGTAGATTGTTTGATAAATGCGCCAGAGGGTATTGAGGGCGCGATTTACACTGCACCTTA
CAGCCAATTTCATAATGTGGTGGTTAGCTTGGAAGCATCACAACTGACGATTGATAAAATTGATGATCTCTCATCTATCA
GTTTGGTGGGTTTTCAACACGCCAATCGCTTTTTGGGGGTTAATTTTGCGGAACTGACAATGCGCCACTCTAGATATTTA
GAGGTTGCCAGCCAGCGCAATCAGGTGCGGATGCTACTTTTGGGGCGGACGCAGGCAATTGTAATCGATGAAAATATCCT
GCATTGGCAGCTGAAAACATTGCAGTCAGGTCTGGGTGAGTCTAAAGCACTACGCTTTCATGATCTTTTTGAACCAGTCA
TGTTACGAATAGCATGCCTTGATCCGCGGGTTGTCATTGCGCTGAATGCTGGCATTGAACAGATAAAGCTTCAGGGACAA
CAACAACGCATTGTCGACAGTTACCGCCTGAAATCAGGAACCGTTAAGTACTGA

Upstream 100 bases:

>100_bases
ACAATTTCGTACAATTTGTGGTTAAGCGAATTCTCAGTAGTTGTCGTAATGTAAGGAAAGACTCTCAAAATTTCATGGCG
AATAACTTTTTATAACTGAT

Downstream 100 bases:

>100_bases
CTAAGATTCACTATACTGATTAGGATGCTGACAAAGGACTGAACAGGCACTCTCTGTTGACCTATGCACCAGCCGGGATG
ACCGGGTATAGGCTTGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: ABC Polar Amino Acid Transport System; ABC-Type Amino Acid Transport/Signal Transduction Systems; Amino Acid ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNRRALSTLQRFMAVLCLCGAACIAKTEELRTVTMAVSDSIAPFFIDSQHGLQYELLEAILQHAHFRLNEVKLAPNYRAR
RWLENGEVDCLINAPEGIEGAIYTAPYSQFHNVVVSLEASQLTIDKIDDLSSISLVGFQHANRFLGVNFAELTMRHSRYL
EVASQRNQVRMLLLGRTQAIVIDENILHWQLKTLQSGLGESKALRFHDLFEPVMLRIACLDPRVVIALNAGIEQIKLQGQ
QQRIVDSYRLKSGTVKY

Sequences:

>Translated_257_residues
MNRRALSTLQRFMAVLCLCGAACIAKTEELRTVTMAVSDSIAPFFIDSQHGLQYELLEAILQHAHFRLNEVKLAPNYRAR
RWLENGEVDCLINAPEGIEGAIYTAPYSQFHNVVVSLEASQLTIDKIDDLSSISLVGFQHANRFLGVNFAELTMRHSRYL
EVASQRNQVRMLLLGRTQAIVIDENILHWQLKTLQSGLGESKALRFHDLFEPVMLRIACLDPRVVIALNAGIEQIKLQGQ
QQRIVDSYRLKSGTVKY
>Mature_257_residues
MNRRALSTLQRFMAVLCLCGAACIAKTEELRTVTMAVSDSIAPFFIDSQHGLQYELLEAILQHAHFRLNEVKLAPNYRAR
RWLENGEVDCLINAPEGIEGAIYTAPYSQFHNVVVSLEASQLTIDKIDDLSSISLVGFQHANRFLGVNFAELTMRHSRYL
EVASQRNQVRMLLLGRTQAIVIDENILHWQLKTLQSGLGESKALRFHDLFEPVMLRIACLDPRVVIALNAGIEQIKLQGQ
QQRIVDSYRLKSGTVKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29080; Mature: 29080

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRALSTLQRFMAVLCLCGAACIAKTEELRTVTMAVSDSIAPFFIDSQHGLQYELLEAI
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEECCCCCCCEEEECCCCCHHHHHHHH
LQHAHFRLNEVKLAPNYRARRWLENGEVDCLINAPEGIEGAIYTAPYSQFHNVVVSLEAS
HHHHCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEECCHHHHCEEEEEEECC
QLTIDKIDDLSSISLVGFQHANRFLGVNFAELTMRHSRYLEVASQRNQVRMLLLGRTQAI
EEEHHHHCCCCCEEEEEHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEE
VIDENILHWQLKTLQSGLGESKALRFHDLFEPVMLRIACLDPRVVIALNAGIEQIKLQGQ
EEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCH
QQRIVDSYRLKSGTVKY
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNRRALSTLQRFMAVLCLCGAACIAKTEELRTVTMAVSDSIAPFFIDSQHGLQYELLEAI
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEECCCCCCCEEEECCCCCHHHHHHHH
LQHAHFRLNEVKLAPNYRARRWLENGEVDCLINAPEGIEGAIYTAPYSQFHNVVVSLEAS
HHHHCCEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEECCHHHHCEEEEEEECC
QLTIDKIDDLSSISLVGFQHANRFLGVNFAELTMRHSRYLEVASQRNQVRMLLLGRTQAI
EEEHHHHCCCCCEEEEEHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEE
VIDENILHWQLKTLQSGLGESKALRFHDLFEPVMLRIACLDPRVVIALNAGIEQIKLQGQ
EEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCH
QQRIVDSYRLKSGTVKY
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA