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The map label for this gene is hlyB [H]

Identifier: 119773692

GI number: 119773692

Start: 678644

End: 680590

Strand: Direct

Name: hlyB [H]

Synonym: Sama_0552

Alternate gene names: 119773692

Gene position: 678644-680590 (Clockwise)

Preceding gene: 119773691

Following gene: 119773696

Centisome position: 15.76

GC content: 47.41

Gene sequence:

>1947_bases
ATGATGTTCAATCTCAGTCGATTAAAGATTAAGACCGTGGTTGCTGTTGGTATGGCCGGTGCGCTGTTTTGTTCCATGCT
GTTTTCAACTCTGATTTATATCGGTCAATTTTCGCAGATGTTTTACAGCCAGACTGAAGAGGGGCTTTTACCAGCTCAGC
TTGGTAAGGCAAGTGCCGAAATTGATACCGAGTTGACCAAATATCTCACTTTGTCGGAAGACTTAGCCAGTAATCACTTT
ATTAATCTCTGGCAGCAACAAGGTGAACCTGAAGGTGGTCGAGGAGATATTGTCCAATTTCTTAAAGGCTATCTGAATCA
GCAGGGCGTCTTGGCTGCTTTTTGGATTTCCGTTGCCAGTGGAAACTACTATACCAACGAAGGTATTGTTAAGACGCTAT
CACGGCAAAGCAATCGTGATCAGTGGTTTTATGAGTTTCTGAGTCGAAATAATGACATGGAAGCGGCATTAGACACCGAC
GAGACCCTGGGGAAATTGACGGTTTACATCAATATTTCAGTGCGTGATACCACAGGTAAAATTGTGGCCGTTGCGGGTAT
TGGCGTGGATGCTTCCAAAATTTCCGATATTGTCACTCGCGCCAGCATGGGCGAATCCGGTTACATGTTCATGCTCAATG
AGCATGGTAATTTTGCCGCTCACAAAGACAGAACGTTGCTGAATCGTTCGCTGTCGCAAATGACCGACTATCTCCCGGTA
CAGAACACGCTGAACGGAAATGCTTCTGGAGAGAGAATTCTTTCGGCTGAACTGAAGGGGGAGGAGGTTTATATAGGTGT
CGTTTACCTCCCTAAGATGAAGTGGAATTTGGTGGGCATCATGCCCAAAGCGGAAATCAGTAGTCAGATAAACCAAGTAA
TAGGCATTTCGGTTGGGATTAGTGTGTTGATTGCACTCTTTTTTATATCGATGTCATTTTTATTGGCTGGGAATGTCAGT
AAGCACATATTGGCGATAAGTGATCGTTTGCTCAGCATGTCCAGAGATGGCGGAAATATACAGCAGAGGCTGGATGACGG
CACTGACAATGAAGTTGGGCAATTGGCCAAAGGCTTCAACGCCATCATGGGTAAAATAGGGAACCTCGTTGATGAAATTC
AACAAGGTGAACGGGCGATTACCGCCAGTGTTGATTTGCTGAATAGCTTGTCCCAGCAAACGGTGACACACGCTGAAGCC
CAGCAGCAGCAAACAGAGCAGGTCGCAACTGCCATCAACCAAATGGGTCAGACCATTGCGGAAGTATCGTCGGTCGCCCA
CCGTATAGCAGCCGATACCAGCTCGGCCGTGAGCGATGTGCATAACACCAGCAATGTTATGCTCAACCTGGCGGCGACCA
TGGAGAAGTTGTCAGCTTCAATGAATGGTACGCAATCCACAGTGAACGACTTGGCAACCCAGGCGGAATCAATCAATTCT
GTCGTGGAGGTGATCAGTAGCATTTCGGAGCAAACTAACCTTTTGGCACTTAATGCGGCCATTGAAGCAGCCCGAGCTGG
TGAGATGGGACGCGGTTTTGCCGTCGTTGCCGATGAAGTACGTACTCTAGCCAGTCGAACCCAAGACTCTACTTCCGAAA
TTCGTACGCAAATAGAAAAGCTACAACAGGCCGTAGGTCTGACTCGTCAGGCCGTTGGTGACGCAGCCAAACAAAGCTCG
CTTTTGGCAACGGACGCAATCGAAGCTACCGGAGCGCTCAAAACCGTGCAGGAAAAATTTGATGATATTAACCAAGGCAA
TCAACAGGTTGCCGCCGCAACGGAAGAGCAGGCAAGTGTCGTTGATCATGTTAACGAATCTGCTCATGTCATCGCCGATA
CTGCTGGGTACATAAATGGTAGCGCGCTGCAATGCTTTGATGAAATTCGTAATTTACAGGGGCAGGCAGATAGGATGTCT
CGTTTGGTAAAACAGTTTGAACAATGA

Upstream 100 bases:

>100_bases
AGATTCACTATACTGATTAGGATGCTGACAAAGGACTGAACAGGCACTCTCTGTTGACCTATGCACCAGCCGGGATGACC
GGGTATAGGCTTGGGAAATG

Downstream 100 bases:

>100_bases
AGATTGAGATACATTGGAGTGAAATTTACGCAGTCGCACTCATACAGTCAAAGAAGCGCTTTAAAAGGCTTGCCTTGACT
GGAAGGCCGCGTATAATCCA

Product: putative methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 648; Mature: 648

Protein sequence:

>648_residues
MMFNLSRLKIKTVVAVGMAGALFCSMLFSTLIYIGQFSQMFYSQTEEGLLPAQLGKASAEIDTELTKYLTLSEDLASNHF
INLWQQQGEPEGGRGDIVQFLKGYLNQQGVLAAFWISVASGNYYTNEGIVKTLSRQSNRDQWFYEFLSRNNDMEAALDTD
ETLGKLTVYINISVRDTTGKIVAVAGIGVDASKISDIVTRASMGESGYMFMLNEHGNFAAHKDRTLLNRSLSQMTDYLPV
QNTLNGNASGERILSAELKGEEVYIGVVYLPKMKWNLVGIMPKAEISSQINQVIGISVGISVLIALFFISMSFLLAGNVS
KHILAISDRLLSMSRDGGNIQQRLDDGTDNEVGQLAKGFNAIMGKIGNLVDEIQQGERAITASVDLLNSLSQQTVTHAEA
QQQQTEQVATAINQMGQTIAEVSSVAHRIAADTSSAVSDVHNTSNVMLNLAATMEKLSASMNGTQSTVNDLATQAESINS
VVEVISSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQDSTSEIRTQIEKLQQAVGLTRQAVGDAAKQSS
LLATDAIEATGALKTVQEKFDDINQGNQQVAAATEEQASVVDHVNESAHVIADTAGYINGSALQCFDEIRNLQGQADRMS
RLVKQFEQ

Sequences:

>Translated_648_residues
MMFNLSRLKIKTVVAVGMAGALFCSMLFSTLIYIGQFSQMFYSQTEEGLLPAQLGKASAEIDTELTKYLTLSEDLASNHF
INLWQQQGEPEGGRGDIVQFLKGYLNQQGVLAAFWISVASGNYYTNEGIVKTLSRQSNRDQWFYEFLSRNNDMEAALDTD
ETLGKLTVYINISVRDTTGKIVAVAGIGVDASKISDIVTRASMGESGYMFMLNEHGNFAAHKDRTLLNRSLSQMTDYLPV
QNTLNGNASGERILSAELKGEEVYIGVVYLPKMKWNLVGIMPKAEISSQINQVIGISVGISVLIALFFISMSFLLAGNVS
KHILAISDRLLSMSRDGGNIQQRLDDGTDNEVGQLAKGFNAIMGKIGNLVDEIQQGERAITASVDLLNSLSQQTVTHAEA
QQQQTEQVATAINQMGQTIAEVSSVAHRIAADTSSAVSDVHNTSNVMLNLAATMEKLSASMNGTQSTVNDLATQAESINS
VVEVISSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQDSTSEIRTQIEKLQQAVGLTRQAVGDAAKQSS
LLATDAIEATGALKTVQEKFDDINQGNQQVAAATEEQASVVDHVNESAHVIADTAGYINGSALQCFDEIRNLQGQADRMS
RLVKQFEQ
>Mature_648_residues
MMFNLSRLKIKTVVAVGMAGALFCSMLFSTLIYIGQFSQMFYSQTEEGLLPAQLGKASAEIDTELTKYLTLSEDLASNHF
INLWQQQGEPEGGRGDIVQFLKGYLNQQGVLAAFWISVASGNYYTNEGIVKTLSRQSNRDQWFYEFLSRNNDMEAALDTD
ETLGKLTVYINISVRDTTGKIVAVAGIGVDASKISDIVTRASMGESGYMFMLNEHGNFAAHKDRTLLNRSLSQMTDYLPV
QNTLNGNASGERILSAELKGEEVYIGVVYLPKMKWNLVGIMPKAEISSQINQVIGISVGISVLIALFFISMSFLLAGNVS
KHILAISDRLLSMSRDGGNIQQRLDDGTDNEVGQLAKGFNAIMGKIGNLVDEIQQGERAITASVDLLNSLSQQTVTHAEA
QQQQTEQVATAINQMGQTIAEVSSVAHRIAADTSSAVSDVHNTSNVMLNLAATMEKLSASMNGTQSTVNDLATQAESINS
VVEVISSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQDSTSEIRTQIEKLQQAVGLTRQAVGDAAKQSS
LLATDAIEATGALKTVQEKFDDINQGNQQVAAATEEQASVVDHVNESAHVIADTAGYINGSALQCFDEIRNLQGQADRMS
RLVKQFEQ

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=316, Percent_Identity=27.5316455696203, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1787690, Length=336, Percent_Identity=27.6785714285714, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1789453, Length=395, Percent_Identity=28.1012658227848, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788195, Length=268, Percent_Identity=30.2238805970149, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788194, Length=213, Percent_Identity=31.4553990610329, Blast_Score=86, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 70076; Mature: 70076

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFNLSRLKIKTVVAVGMAGALFCSMLFSTLIYIGQFSQMFYSQTEEGLLPAQLGKASAE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHH
IDTELTKYLTLSEDLASNHFINLWQQQGEPEGGRGDIVQFLKGYLNQQGVLAAFWISVAS
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC
GNYYTNEGIVKTLSRQSNRDQWFYEFLSRNNDMEAALDTDETLGKLTVYINISVRDTTGK
CCEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
IVAVAGIGVDASKISDIVTRASMGESGYMFMLNEHGNFAAHKDRTLLNRSLSQMTDYLPV
EEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
QNTLNGNASGERILSAELKGEEVYIGVVYLPKMKWNLVGIMPKAEISSQINQVIGISVGI
CCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHH
SVLIALFFISMSFLLAGNVSKHILAISDRLLSMSRDGGNIQQRLDDGTDNEVGQLAKGFN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHH
AIMGKIGNLVDEIQQGERAITASVDLLNSLSQQTVTHAEAQQQQTEQVATAINQMGQTIA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVSSVAHRIAADTSSAVSDVHNTSNVMLNLAATMEKLSASMNGTQSTVNDLATQAESINS
HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VVEVISSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQDSTSEIRTQIEK
HHHHHHHHHHHHCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LQQAVGLTRQAVGDAAKQSSLLATDAIEATGALKTVQEKFDDINQGNQQVAAATEEQASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VDHVNESAHVIADTAGYINGSALQCFDEIRNLQGQADRMSRLVKQFEQ
HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MMFNLSRLKIKTVVAVGMAGALFCSMLFSTLIYIGQFSQMFYSQTEEGLLPAQLGKASAE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHH
IDTELTKYLTLSEDLASNHFINLWQQQGEPEGGRGDIVQFLKGYLNQQGVLAAFWISVAS
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHC
GNYYTNEGIVKTLSRQSNRDQWFYEFLSRNNDMEAALDTDETLGKLTVYINISVRDTTGK
CCEECCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
IVAVAGIGVDASKISDIVTRASMGESGYMFMLNEHGNFAAHKDRTLLNRSLSQMTDYLPV
EEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
QNTLNGNASGERILSAELKGEEVYIGVVYLPKMKWNLVGIMPKAEISSQINQVIGISVGI
CCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHH
SVLIALFFISMSFLLAGNVSKHILAISDRLLSMSRDGGNIQQRLDDGTDNEVGQLAKGFN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHH
AIMGKIGNLVDEIQQGERAITASVDLLNSLSQQTVTHAEAQQQQTEQVATAINQMGQTIA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVSSVAHRIAADTSSAVSDVHNTSNVMLNLAATMEKLSASMNGTQSTVNDLATQAESINS
HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VVEVISSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQDSTSEIRTQIEK
HHHHHHHHHHHHCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LQQAVGLTRQAVGDAAKQSSLLATDAIEATGALKTVQEKFDDINQGNQQVAAATEEQASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VDHVNESAHVIADTAGYINGSALQCFDEIRNLQGQADRMSRLVKQFEQ
HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]