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The map label for this gene is yxjO [H]

Identifier: 119773415

GI number: 119773415

Start: 315340

End: 316263

Strand: Reverse

Name: yxjO [H]

Synonym: Sama_0274

Alternate gene names: 119773415

Gene position: 316263-315340 (Counterclockwise)

Preceding gene: 119773424

Following gene: 119773414

Centisome position: 7.34

GC content: 58.01

Gene sequence:

>924_bases
ATGCTCAATCCCCTCTGGCTAAAAACCTTTATCACCCTGGTGGAAACCGGCCACTTTACCCAAACGGCAAGCAAGCTGTT
TATGACCCAGCCCGGGGTAAGCCAACACCTGAATAAGCTGGAGCAGGCCTGTGGCCACCAGCTGCTTATCCGCAGCCGCA
GTGGCATCGAATTGACCGAAGCGGGCGAGCGACTGTATCAGTATGCGCTCTCTCAGGCCCGGGCCGAGGCGGCGCTGCTG
GATAGCCTGGATGAGGACAATCCTTTCAGCGGCAGCTGTCGTCTCGCCTGCTCCGGCTCGCTGGCGCAGCTGCTCTACCC
CAAGCTGTTGGCGCTGCAAGCAGCGCATCCGGGGCTTAAGGTGCATATGGAGGCCGCGCCCAATGCCCGCATCATCAACG
AGGTGCAGCAAGGCGATAAGGACCTTGGCATTATCACGGCGCCGCCGCCGAGGGGGCTGTTCAGTGACACTGACATAGGC
ACCCAGGCGCTGTGTTTGGTGTTACCGGCAAGCAGCGAAGCCACCACAGATGACGCCAGTCTCCCTTCAATAAACGAACT
CAAAGTCCTTGGGCTGATAAGCCACCCGGATGCCGCCCATTATCTGTCGCTGTTTTTTGCCCACAGTGGCAGCCCCGGCT
ACCAAAATGCCTTCGCCGAAGACTTTCCCATCAGCAGTTACATTAATCAGTTGGGGCAAATCCTGTTGCCTGTATCCATG
GGACTGGGCTTTACCGTGCTGCCACTGTCGGTGGTCGAGCAATTCAGCGAGCGGGACAAACTCAGGGTGTGTGTTGGGCT
GGAGCGGGTATTCGAGCCACTGTATCTCATCCATAAACGCCAGCGGCAACTGCCCGCCCGATTTGATACTATTCGCAGCC
TGATCCAATCCGTGCTGACAAGCACAACTGACAGCCCCCAATGA

Upstream 100 bases:

>100_bases
GACGCGAACAGATAGCAACGCGGGTTTGCCACTATGCAGATAGGCAACTATGCAGACAGGCCGCTCGGCACAGTGTCAGT
AATCAGGAGTCCACAGGCCC

Downstream 100 bases:

>100_bases
GCCTGCCTGTGAACAAGACTTTTATTATCAGCCTGCCCCGAACCGGCACCACCAGTGTGTGTGTGGCCCTGCTTGAGGCA
GCGCCAAGGGCGGGGCTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MLNPLWLKTFITLVETGHFTQTASKLFMTQPGVSQHLNKLEQACGHQLLIRSRSGIELTEAGERLYQYALSQARAEAALL
DSLDEDNPFSGSCRLACSGSLAQLLYPKLLALQAAHPGLKVHMEAAPNARIINEVQQGDKDLGIITAPPPRGLFSDTDIG
TQALCLVLPASSEATTDDASLPSINELKVLGLISHPDAAHYLSLFFAHSGSPGYQNAFAEDFPISSYINQLGQILLPVSM
GLGFTVLPLSVVEQFSERDKLRVCVGLERVFEPLYLIHKRQRQLPARFDTIRSLIQSVLTSTTDSPQ

Sequences:

>Translated_307_residues
MLNPLWLKTFITLVETGHFTQTASKLFMTQPGVSQHLNKLEQACGHQLLIRSRSGIELTEAGERLYQYALSQARAEAALL
DSLDEDNPFSGSCRLACSGSLAQLLYPKLLALQAAHPGLKVHMEAAPNARIINEVQQGDKDLGIITAPPPRGLFSDTDIG
TQALCLVLPASSEATTDDASLPSINELKVLGLISHPDAAHYLSLFFAHSGSPGYQNAFAEDFPISSYINQLGQILLPVSM
GLGFTVLPLSVVEQFSERDKLRVCVGLERVFEPLYLIHKRQRQLPARFDTIRSLIQSVLTSTTDSPQ
>Mature_307_residues
MLNPLWLKTFITLVETGHFTQTASKLFMTQPGVSQHLNKLEQACGHQLLIRSRSGIELTEAGERLYQYALSQARAEAALL
DSLDEDNPFSGSCRLACSGSLAQLLYPKLLALQAAHPGLKVHMEAAPNARIINEVQQGDKDLGIITAPPPRGLFSDTDIG
TQALCLVLPASSEATTDDASLPSINELKVLGLISHPDAAHYLSLFFAHSGSPGYQNAFAEDFPISSYINQLGQILLPVSM
GLGFTVLPLSVVEQFSERDKLRVCVGLERVFEPLYLIHKRQRQLPARFDTIRSLIQSVLTSTTDSPQ

Specific function: Could be the regulatory protein for phosphatidylserine synthetase [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=178, Percent_Identity=31.4606741573034, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=144, Percent_Identity=29.8611111111111, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=28.8732394366197, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=309, Percent_Identity=22.9773462783171, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=30.3030303030303, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788297, Length=139, Percent_Identity=32.3741007194245, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33550; Mature: 33550

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPLWLKTFITLVETGHFTQTASKLFMTQPGVSQHLNKLEQACGHQLLIRSRSGIELTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEEECCCCCCHHH
AGERLYQYALSQARAEAALLDSLDEDNPFSGSCRLACSGSLAQLLYPKLLALQAAHPGLK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
VHMEAAPNARIINEVQQGDKDLGIITAPPPRGLFSDTDIGTQALCLVLPASSEATTDDAS
EEEECCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
LPSINELKVLGLISHPDAAHYLSLFFAHSGSPGYQNAFAEDFPISSYINQLGQILLPVSM
CCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GLGFTVLPLSVVEQFSERDKLRVCVGLERVFEPLYLIHKRQRQLPARFDTIRSLIQSVLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
STTDSPQ
CCCCCCC
>Mature Secondary Structure
MLNPLWLKTFITLVETGHFTQTASKLFMTQPGVSQHLNKLEQACGHQLLIRSRSGIELTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHEEEECCCCCCHHH
AGERLYQYALSQARAEAALLDSLDEDNPFSGSCRLACSGSLAQLLYPKLLALQAAHPGLK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCE
VHMEAAPNARIINEVQQGDKDLGIITAPPPRGLFSDTDIGTQALCLVLPASSEATTDDAS
EEEECCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
LPSINELKVLGLISHPDAAHYLSLFFAHSGSPGYQNAFAEDFPISSYINQLGQILLPVSM
CCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GLGFTVLPLSVVEQFSERDKLRVCVGLERVFEPLYLIHKRQRQLPARFDTIRSLIQSVLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
STTDSPQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]