| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773424
Identifier: 119773424
GI number: 119773424
Start: 331047
End: 331655
Strand: Reverse
Name: 119773424
Synonym: Sama_0283
Alternate gene names: NA
Gene position: 331655-331047 (Counterclockwise)
Preceding gene: 119773429
Following gene: 119773415
Centisome position: 7.7
GC content: 54.52
Gene sequence:
>609_bases ATGACCTCAACAAGCAAATGGCCGCAACTGCTGCTGATTTTGATAGCGCTGGCCCTGCTTATCCCCGGCCTCAGCCTGCC TATGCTAAGCCTCGATGGCCAGGCCGATAAATCCCAGTTTGCCAAAACCACCATAGAGCTCATGACCGACGATGGCGAAG TGCGCGGTATTCTGGGTTCGGTATCCGCCTTTCTGGGCTTTAATCAACTGGAAGGTCAGGTAGAGATTTACCAGAAAAGT CGCAGCATTATCGGCACCATCACAGACCTGTTCGACAGCGGCAACCTGCTGGTTGGCATACTCATAGGCACCTTCTCGGT GGTTATCCCGACCCTGAAACTCTTGTCCCAGGCACTGCTGCTGTTTGCCTCAGGCACCCTCGCCCGGGGCCTTAAAAGCT TTATCGATGCCATCGGCAAGTGGAGCATGGCCGACGTGTTTGTGGTAGCGATTATCGTCAGCTACCTTGCCGGCAACGCC AAGGGCCAGATGGGTGAACTTATCATCATGCACGCCCAGTTCGAGCCCGGCTTTTGGTACTTCACCGGCTACTGCCTGTT TGCCATCGCATCCAATGTGATGATGGGAAGAAGGTTACAAGCGGCGTAA
Upstream 100 bases:
>100_bases AGCCCTGATACTGTAAAACAGCTTTCTTTGCGTTGCCGCCGAACCCCACTTTACGGCGGCCTATTCCAATGACGATTTGA AGTGACTATTTGGAGTGCGT
Downstream 100 bases:
>100_bases AGGTATGCGGCAGGGTTAGCCTGAATCAGTTTGTGGAACACCGGGGCCCAATGGCATCCGGCGCCGGGATTTCCAGATAA TGGCAACCGGACTCAAGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MTSTSKWPQLLLILIALALLIPGLSLPMLSLDGQADKSQFAKTTIELMTDDGEVRGILGSVSAFLGFNQLEGQVEIYQKS RSIIGTITDLFDSGNLLVGILIGTFSVVIPTLKLLSQALLLFASGTLARGLKSFIDAIGKWSMADVFVVAIIVSYLAGNA KGQMGELIIMHAQFEPGFWYFTGYCLFAIASNVMMGRRLQAA
Sequences:
>Translated_202_residues MTSTSKWPQLLLILIALALLIPGLSLPMLSLDGQADKSQFAKTTIELMTDDGEVRGILGSVSAFLGFNQLEGQVEIYQKS RSIIGTITDLFDSGNLLVGILIGTFSVVIPTLKLLSQALLLFASGTLARGLKSFIDAIGKWSMADVFVVAIIVSYLAGNA KGQMGELIIMHAQFEPGFWYFTGYCLFAIASNVMMGRRLQAA >Mature_201_residues TSTSKWPQLLLILIALALLIPGLSLPMLSLDGQADKSQFAKTTIELMTDDGEVRGILGSVSAFLGFNQLEGQVEIYQKSR SIIGTITDLFDSGNLLVGILIGTFSVVIPTLKLLSQALLLFASGTLARGLKSFIDAIGKWSMADVFVVAIIVSYLAGNAK GQMGELIIMHAQFEPGFWYFTGYCLFAIASNVMMGRRLQAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21772; Mature: 21641
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTSKWPQLLLILIALALLIPGLSLPMLSLDGQADKSQFAKTTIELMTDDGEVRGILGS CCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHH VSAFLGFNQLEGQVEIYQKSRSIIGTITDLFDSGNLLVGILIGTFSVVIPTLKLLSQALL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LFASGTLARGLKSFIDAIGKWSMADVFVVAIIVSYLAGNAKGQMGELIIMHAQFEPGFWY HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHH FTGYCLFAIASNVMMGRRLQAA HHHHHHHHHHHHHHHCCHHCCC >Mature Secondary Structure TSTSKWPQLLLILIALALLIPGLSLPMLSLDGQADKSQFAKTTIELMTDDGEVRGILGS CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHH VSAFLGFNQLEGQVEIYQKSRSIIGTITDLFDSGNLLVGILIGTFSVVIPTLKLLSQALL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LFASGTLARGLKSFIDAIGKWSMADVFVVAIIVSYLAGNAKGQMGELIIMHAQFEPGFWY HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHH FTGYCLFAIASNVMMGRRLQAA HHHHHHHHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA