Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773414

Identifier: 119773414

GI number: 119773414

Start: 314648

End: 315343

Strand: Reverse

Name: 119773414

Synonym: Sama_0273

Alternate gene names: NA

Gene position: 315343-314648 (Counterclockwise)

Preceding gene: 119773415

Following gene: 119773413

Centisome position: 7.32

GC content: 57.33

Gene sequence:

>696_bases
ATGAGCCTGCCTGTGAACAAGACTTTTATTATCAGCCTGCCCCGAACCGGCACCACCAGTGTGTGTGTGGCCCTGCTTGA
GGCAGCGCCAAGGGCGGGGCTGGCACCACTTAAGGTGGCGCACATGGCCTTTACCAAGGCGAGCTTTGAGGCCGCCGATG
CCATAGCCGACGCCCCTGTGTTCAGTGACTACCAAAAACTGGACAAACTCTACCCCGGCAGTAAGTTTGTTTATCTTGAC
CGCACAATCGACAGCTGGTTGCCGTCGATGCAAAGGCTGCTCGAGCGCATGTTGCCAAAGCTCGACCCTAACGCCAAAGG
TGGTTTTCACCCGCAGCTGCGGCGCAGTTTTAATGAAGTATTTAAGCTGAATAAGGCTCTGGCAGGCACAGTGGATATGA
TGAGCCCCGCGCACCTGGAGCAATGTTTTACCCGCCACAGGCAAGGGGTAGATGATTATTTCTGTGGCCGCGACGACTTG
CTTTGCCTTGACCCCTCAGCCTCGGGGGCTCTGGCGGCGCTGCACCGATTTTTAGGTCTTGCCGACGTCGCCGAAGACGC
CCCTTTTCCGCACCTGAATCAGGCGGGCCGGGTGGCCGGTTTTGATGAGTTCAAACACCCCAACAAAATCCCCGCCGAGC
TGTCGGGCCCTCAGCGACGCGCCTTTTTCGACTATGCCGTCAACCGTAAAGGTTGA

Upstream 100 bases:

>100_bases
TGTATCTCATCCATAAACGCCAGCGGCAACTGCCCGCCCGATTTGATACTATTCGCAGCCTGATCCAATCCGTGCTGACA
AGCACAACTGACAGCCCCCA

Downstream 100 bases:

>100_bases
TTTGCACTTTAGCTGCTCAGTCGTCACTGATTTTATCTACTACTTTCGGTGTAAGTTCTACACTTTCTAATGCTCTCAAC
ATCTCTATCACTCCGAGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPVFSDYQKLDKLYPGSKFVYLD
RTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEVFKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDL
LCLDPSASGALAALHRFLGLADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG

Sequences:

>Translated_231_residues
MSLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPVFSDYQKLDKLYPGSKFVYLD
RTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEVFKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDL
LCLDPSASGALAALHRFLGLADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG
>Mature_230_residues
SLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPVFSDYQKLDKLYPGSKFVYLDR
TIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEVFKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDLL
CLDPSASGALAALHRFLGLADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25492; Mature: 25360

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPV
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
FSDYQKLDKLYPGSKFVYLDRTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEV
HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
FKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDLLCLDPSASGALAALHRFLGL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHH
ADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG
HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPV
CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
FSDYQKLDKLYPGSKFVYLDRTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEV
HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
FKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDLLCLDPSASGALAALHRFLGL
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHH
ADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG
HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA