| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773414
Identifier: 119773414
GI number: 119773414
Start: 314648
End: 315343
Strand: Reverse
Name: 119773414
Synonym: Sama_0273
Alternate gene names: NA
Gene position: 315343-314648 (Counterclockwise)
Preceding gene: 119773415
Following gene: 119773413
Centisome position: 7.32
GC content: 57.33
Gene sequence:
>696_bases ATGAGCCTGCCTGTGAACAAGACTTTTATTATCAGCCTGCCCCGAACCGGCACCACCAGTGTGTGTGTGGCCCTGCTTGA GGCAGCGCCAAGGGCGGGGCTGGCACCACTTAAGGTGGCGCACATGGCCTTTACCAAGGCGAGCTTTGAGGCCGCCGATG CCATAGCCGACGCCCCTGTGTTCAGTGACTACCAAAAACTGGACAAACTCTACCCCGGCAGTAAGTTTGTTTATCTTGAC CGCACAATCGACAGCTGGTTGCCGTCGATGCAAAGGCTGCTCGAGCGCATGTTGCCAAAGCTCGACCCTAACGCCAAAGG TGGTTTTCACCCGCAGCTGCGGCGCAGTTTTAATGAAGTATTTAAGCTGAATAAGGCTCTGGCAGGCACAGTGGATATGA TGAGCCCCGCGCACCTGGAGCAATGTTTTACCCGCCACAGGCAAGGGGTAGATGATTATTTCTGTGGCCGCGACGACTTG CTTTGCCTTGACCCCTCAGCCTCGGGGGCTCTGGCGGCGCTGCACCGATTTTTAGGTCTTGCCGACGTCGCCGAAGACGC CCCTTTTCCGCACCTGAATCAGGCGGGCCGGGTGGCCGGTTTTGATGAGTTCAAACACCCCAACAAAATCCCCGCCGAGC TGTCGGGCCCTCAGCGACGCGCCTTTTTCGACTATGCCGTCAACCGTAAAGGTTGA
Upstream 100 bases:
>100_bases TGTATCTCATCCATAAACGCCAGCGGCAACTGCCCGCCCGATTTGATACTATTCGCAGCCTGATCCAATCCGTGCTGACA AGCACAACTGACAGCCCCCA
Downstream 100 bases:
>100_bases TTTGCACTTTAGCTGCTCAGTCGTCACTGATTTTATCTACTACTTTCGGTGTAAGTTCTACACTTTCTAATGCTCTCAAC ATCTCTATCACTCCGAGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MSLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPVFSDYQKLDKLYPGSKFVYLD RTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEVFKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDL LCLDPSASGALAALHRFLGLADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG
Sequences:
>Translated_231_residues MSLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPVFSDYQKLDKLYPGSKFVYLD RTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEVFKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDL LCLDPSASGALAALHRFLGLADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG >Mature_230_residues SLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPVFSDYQKLDKLYPGSKFVYLDR TIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEVFKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDLL CLDPSASGALAALHRFLGLADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25492; Mature: 25360
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: PS00284 SERPIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPV CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH FSDYQKLDKLYPGSKFVYLDRTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEV HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH FKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDLLCLDPSASGALAALHRFLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHH ADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure SLPVNKTFIISLPRTGTTSVCVALLEAAPRAGLAPLKVAHMAFTKASFEAADAIADAPV CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH FSDYQKLDKLYPGSKFVYLDRTIDSWLPSMQRLLERMLPKLDPNAKGGFHPQLRRSFNEV HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH FKLNKALAGTVDMMSPAHLEQCFTRHRQGVDDYFCGRDDLLCLDPSASGALAALHRFLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCEEEECCCCCHHHHHHHHHHHH ADVAEDAPFPHLNQAGRVAGFDEFKHPNKIPAELSGPQRRAFFDYAVNRKG HHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA