| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773305
Identifier: 119773305
GI number: 119773305
Start: 193206
End: 193613
Strand: Reverse
Name: 119773305
Synonym: Sama_0163
Alternate gene names: NA
Gene position: 193613-193206 (Counterclockwise)
Preceding gene: 119773306
Following gene: 119773304
Centisome position: 4.5
GC content: 54.17
Gene sequence:
>408_bases ATGTACAAAGGGAGTTGTTTGTGCGGCGCTATCCATTACACCCTTAACGGGGCCATCAGCGACATTATTCATTGTCACTG TTCCCTGTGCCGCAAATCCACCGGCAGCGCTTATGCCACCAACGGTTTTATCGCAGCAAGCGATCTGCACCTCAGTGATG CTGACAATAAGCTGACCTTCTACGAAAGCGAGCCGGGCAAGCGGAAATATTTTTGTCAGGTTTGCGCCTCGCCGATTTAC AGCGCCAACGCCAAATACCCGGGCCGTTATCGCCTGCGAATCGGCTCCCTCGACTCCGACATTATCGAGCGCCCCCTATC CCATAATTTTATTACCTCAAAGGCCAACTGGGACGACCCTGATGCCGAGCTCCCCCGCTACGCGGCGTTTGAGCCTTCAC GCAAGTAA
Upstream 100 bases:
>100_bases GCGCAAGCCATCCGACGGTTTATCTGCTTTAGGCAATCCTGATACAAGGTTAAGATAATGAGCCACCCTGGCTCATACTT ATCAGATTGCAGAGGACCTT
Downstream 100 bases:
>100_bases GGGTTAATCCATCCTGTGTGCTATGGCTGGAATACCAAGGACAGGGGCATACCCTAGCCTTGGTTCCCGGCGACACAATT CAGACTGGCGCTGACTGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Glutathione-Dependent Formaldehyde-Activating Protein; ADP-Ribosylglycohydrolase Family Protein; Glutathione-Dependent Formaldehyde-Activating Gfa; ATPase; Glutathione-Dependent Formaldehyde-Activating; Glutathione-Dependent Formaldehyde-Activating Family
Number of amino acids: Translated: 135; Mature: 135
Protein sequence:
>135_residues MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTFYESEPGKRKYFCQVCASPIY SANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDPDAELPRYAAFEPSRK
Sequences:
>Translated_135_residues MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTFYESEPGKRKYFCQVCASPIY SANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDPDAELPRYAAFEPSRK >Mature_135_residues MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTFYESEPGKRKYFCQVCASPIY SANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDPDAELPRYAAFEPSRK
Specific function: Unknown
COG id: COG3791
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15022; Mature: 15022
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 5.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTF CCCCCEEEEEHEEHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCEEECCCCCEEEE YESEPGKRKYFCQVCASPIYSANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDP EECCCCCHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCCEEECCCCCCCC DAELPRYAAFEPSRK CCCCCCEECCCCCCC >Mature Secondary Structure MYKGSCLCGAIHYTLNGAISDIIHCHCSLCRKSTGSAYATNGFIAASDLHLSDADNKLTF CCCCCEEEEEHEEHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCEEECCCCCEEEE YESEPGKRKYFCQVCASPIYSANAKYPGRYRLRIGSLDSDIIERPLSHNFITSKANWDDP EECCCCCHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCHHHHHCCCCCCEEECCCCCCCC DAELPRYAAFEPSRK CCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA