Click here to switch to the map view.

The map label for this gene is exbD2 [H]

Identifier: 119773304

GI number: 119773304

Start: 192484

End: 192888

Strand: Reverse

Name: exbD2 [H]

Synonym: Sama_0162

Alternate gene names: 119773304

Gene position: 192888-192484 (Counterclockwise)

Preceding gene: 119773305

Following gene: 119773303

Centisome position: 4.48

GC content: 52.84

Gene sequence:

>405_bases
ATGGCATTTAAAAAATACGCTGCCGAGCATGAGGAAGCCAAGGTCGATATGACCCCCATGCTGGATATCATTTTCATCAT
GTTGATTTTTTTCATTGTCACCACCTCATTCGTCAAGCCCATGGGGATTGACTACGACAAGCCTGAATCGGCGCAAAAGT
CCCGCGCCAAGGGGGACAACGTGCTGATCACCGTCAGTAAAACCGGGCTGATAACCATGGAGGGGCGCCAGGTGGACATG
GAGAGGGTCACTGCCAACATTGAGCGCAAACTGGCCGAAACCCCGGGGGCTGCCGTACTTATCCAGGCCGACGGCGAAAC
CCTGCATGGCACAGTGGTGGGGGTTATGGATAAAGTAAAGGCCGCTGGCGTTCGCAAAATTTCAGTGACCCAAACGGATG
AATAA

Upstream 100 bases:

>100_bases
AATGCGATGTATAAATTATCAGCTTCTTTTCCACGCAAACCGATAGCAATAACTGCTCCAGCTGTGCAGTAAAAGTGACC
GCGCAATAGGGGGAATTGAT

Downstream 100 bases:

>100_bases
AGGCCTCCTTGCCACTGGTCCAGCAAAAAAATGGCTCCCGCAGGAGCCATTTTTAACTGTCAAATCAGTGCCGGTTAAAC
AGCGCTGCTGCAACAGAGCT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MAFKKYAAEHEEAKVDMTPMLDIIFIMLIFFIVTTSFVKPMGIDYDKPESAQKSRAKGDNVLITVSKTGLITMEGRQVDM
ERVTANIERKLAETPGAAVLIQADGETLHGTVVGVMDKVKAAGVRKISVTQTDE

Sequences:

>Translated_134_residues
MAFKKYAAEHEEAKVDMTPMLDIIFIMLIFFIVTTSFVKPMGIDYDKPESAQKSRAKGDNVLITVSKTGLITMEGRQVDM
ERVTANIERKLAETPGAAVLIQADGETLHGTVVGVMDKVKAAGVRKISVTQTDE
>Mature_133_residues
AFKKYAAEHEEAKVDMTPMLDIIFIMLIFFIVTTSFVKPMGIDYDKPESAQKSRAKGDNVLITVSKTGLITMEGRQVDME
RVTANIERKLAETPGAAVLIQADGETLHGTVVGVMDKVKAAGVRKISVTQTDE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14690; Mature: 14559

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKKYAAEHEEAKVDMTPMLDIIFIMLIFFIVTTSFVKPMGIDYDKPESAQKSRAKGDN
CCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCC
VLITVSKTGLITMEGRQVDMERVTANIERKLAETPGAAVLIQADGETLHGTVVGVMDKVK
EEEEEECCCEEEECCCEECHHHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHHHHHHHH
AAGVRKISVTQTDE
HCCCEEEEEEECCC
>Mature Secondary Structure 
AFKKYAAEHEEAKVDMTPMLDIIFIMLIFFIVTTSFVKPMGIDYDKPESAQKSRAKGDN
CCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCC
VLITVSKTGLITMEGRQVDMERVTANIERKLAETPGAAVLIQADGETLHGTVVGVMDKVK
EEEEEECCCEEEECCCEECHHHHHHHHHHHHHCCCCCEEEEEECCCEECHHHHHHHHHHH
AAGVRKISVTQTDE
HCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]