| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is kbl [C]
Identifier: 119773240
GI number: 119773240
Start: 110838
End: 112031
Strand: Reverse
Name: kbl [C]
Synonym: Sama_0098
Alternate gene names: 119773240
Gene position: 112031-110838 (Counterclockwise)
Preceding gene: 119773241
Following gene: 119773239
Centisome position: 2.6
GC content: 56.03
Gene sequence:
>1194_bases GTGGCATCAACCTCATTCTACGAGCAGATCAAACAACAACTCGCCGACGTTAAGGCCGAAGGCCTCTACAAAAGCGAACG CGTGATCGTCTCACCGCAACAGGCTGCAATTAAGGTGGGCGGCGATGAAGTCATTAACTTCTGCGCCAACAACTATTTGG GCCTGGCCAACCATCCTGAGCTGGTCAAAGCCGCTCAAGCAGGTTTGGCCGACCACGGCTTTGGTATGGCCTCAGTGCGC TTTATCTGCGGCACCCAGGACATCCACAAACAGCTGGAAGCGAAACTGTCTGAATTCCTCGGCACCGAAGATACCATCCT GTATTCCTCTTGCTTCGATGCCAATGCCGGCCTGTTCGAAACCCTGCTCGGCCCCGAAGATGCCATCGTCTCCGATGCAC TGAACCACGCTTCTATCATCGACGGTGTGCGCCTGTGTAAAGCCATGCGATTCCGTTATGCCAACAATGATATGGCCGAT CTGGAAACCCAGCTTAAAGCAGCCCGCGAGGCCGGTGCCCGTCATATCCTGATTGCCACCGATGGTGTGTTCTCCATGGA TGGCGTAATTGCCAACCTAAAAGGTGTGTGTGACCTTGCCGACCAATACGGCGCCCTGGTGATGGTAGACGACTCCCACG CGGTGGGCTTTATCGGCCAAAATGGTCGTGGTACTCACGAGTACTGTGACGTGATGGACCGGGTAGACATCATCACAGGT ACACTGGGCAAGGCTCTGGGCGGCGCCTCGGGTGGTTACACCTCGGGTAAAAAAGAAGTGATCGACTGGCTGCGTCAACG CTCACGCCCTTATCTGTTCTCCAACTCACTGGCCCCGTCCATTGTGGCCGCCTCTATCCGCGTGCTCGACATGCTCAAAG ATGGCCAGGCACTGCGTGAAGCCGTATGGGAAAACAGCCGTTATTTCCGTGAAAAAATGTCTGCTGCCGGTTTCACCCTG GCCGGTGCCGACCATGCCATCGTTCCGGTTATGCTGGGCGATGCCAAGCTGGCTGCCGATTTCTCGGCCCGCCTGCTGAA AGAAGATATTTACGTGATTGGTTTCTCCTTCCCTGTGGTGCCAAAGGGCCAGGCCCGTATCCGCACCCAGATGTCTGCCG CCCACACCCGTGCGCAGCTGGACAAGGCCATTGAAGCCTTCACCCGTATTGGTAAGGAAATGGGCATCATCTGA
Upstream 100 bases:
>100_bases GCGATTGGTGCATCAAAAATAAGCTGCGGGCCGATTAGGTTTAGGGGTAGAATGCCGTCACTCCAGCAAAAGCAGAATAA AGTTAACTAAGGAGAGACCA
Downstream 100 bases:
>100_bases TGTCCATTTTGGAGTAAGCACATGAAAGCACTTGCTAAACTCAAGCCTGAAGAAGGCATTTGGATGGTTGATGCCCCCAA GCCGGAAATGGGCCATAACG
Product: 2-amino-3-ketobutyrate coenzyme A ligase
Products: NA
Alternate protein names: AONS/AKB ligase; 7-keto-8-amino-pelargonic acid synthase; 7-KAP synthase; KAPA synthase; 8-amino-7-ketopelargonate synthase; Alpha-oxoamine synthase; L-alanine--pimeloyl-CoA ligase [H]
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MASTSFYEQIKQQLADVKAEGLYKSERVIVSPQQAAIKVGGDEVINFCANNYLGLANHPELVKAAQAGLADHGFGMASVR FICGTQDIHKQLEAKLSEFLGTEDTILYSSCFDANAGLFETLLGPEDAIVSDALNHASIIDGVRLCKAMRFRYANNDMAD LETQLKAAREAGARHILIATDGVFSMDGVIANLKGVCDLADQYGALVMVDDSHAVGFIGQNGRGTHEYCDVMDRVDIITG TLGKALGGASGGYTSGKKEVIDWLRQRSRPYLFSNSLAPSIVAASIRVLDMLKDGQALREAVWENSRYFREKMSAAGFTL AGADHAIVPVMLGDAKLAADFSARLLKEDIYVIGFSFPVVPKGQARIRTQMSAAHTRAQLDKAIEAFTRIGKEMGII
Sequences:
>Translated_397_residues MASTSFYEQIKQQLADVKAEGLYKSERVIVSPQQAAIKVGGDEVINFCANNYLGLANHPELVKAAQAGLADHGFGMASVR FICGTQDIHKQLEAKLSEFLGTEDTILYSSCFDANAGLFETLLGPEDAIVSDALNHASIIDGVRLCKAMRFRYANNDMAD LETQLKAAREAGARHILIATDGVFSMDGVIANLKGVCDLADQYGALVMVDDSHAVGFIGQNGRGTHEYCDVMDRVDIITG TLGKALGGASGGYTSGKKEVIDWLRQRSRPYLFSNSLAPSIVAASIRVLDMLKDGQALREAVWENSRYFREKMSAAGFTL AGADHAIVPVMLGDAKLAADFSARLLKEDIYVIGFSFPVVPKGQARIRTQMSAAHTRAQLDKAIEAFTRIGKEMGII >Mature_396_residues ASTSFYEQIKQQLADVKAEGLYKSERVIVSPQQAAIKVGGDEVINFCANNYLGLANHPELVKAAQAGLADHGFGMASVRF ICGTQDIHKQLEAKLSEFLGTEDTILYSSCFDANAGLFETLLGPEDAIVSDALNHASIIDGVRLCKAMRFRYANNDMADL ETQLKAAREAGARHILIATDGVFSMDGVIANLKGVCDLADQYGALVMVDDSHAVGFIGQNGRGTHEYCDVMDRVDIITGT LGKALGGASGGYTSGKKEVIDWLRQRSRPYLFSNSLAPSIVAASIRVLDMLKDGQALREAVWENSRYFREKMSAAGFTLA GADHAIVPVMLGDAKLAADFSARLLKEDIYVIGFSFPVVPKGQARIRTQMSAAHTRAQLDKAIEAFTRIGKEMGII
Specific function: Catalyzes the decarboxylative condensation of pimeloyl- CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA [H]
COG id: COG0156
COG function: function code H; 7-keto-8-aminopelargonate synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7657118, Length=390, Percent_Identity=55.3846153846154, Blast_Score=448, Evalue=1e-126, Organism=Homo sapiens, GI284448556, Length=416, Percent_Identity=51.9230769230769, Blast_Score=438, Evalue=1e-123, Organism=Homo sapiens, GI83977442, Length=362, Percent_Identity=35.6353591160221, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI83977440, Length=362, Percent_Identity=35.6353591160221, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI83977444, Length=362, Percent_Identity=35.6353591160221, Blast_Score=229, Evalue=4e-60, Organism=Homo sapiens, GI4758668, Length=365, Percent_Identity=38.0821917808219, Blast_Score=208, Evalue=7e-54, Organism=Homo sapiens, GI4502025, Length=363, Percent_Identity=32.5068870523416, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI40316939, Length=363, Percent_Identity=32.5068870523416, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI119220554, Length=365, Percent_Identity=35.0684931506849, Blast_Score=206, Evalue=4e-53, Organism=Homo sapiens, GI5454084, Length=261, Percent_Identity=31.4176245210728, Blast_Score=125, Evalue=7e-29, Organism=Escherichia coli, GI1790046, Length=393, Percent_Identity=76.3358778625954, Blast_Score=636, Evalue=0.0, Organism=Escherichia coli, GI1786993, Length=347, Percent_Identity=32.5648414985591, Blast_Score=180, Evalue=2e-46, Organism=Caenorhabditis elegans, GI71994529, Length=401, Percent_Identity=56.857855361596, Blast_Score=463, Evalue=1e-131, Organism=Caenorhabditis elegans, GI32566772, Length=370, Percent_Identity=33.5135135135135, Blast_Score=204, Evalue=7e-53, Organism=Caenorhabditis elegans, GI17560912, Length=365, Percent_Identity=34.2465753424658, Blast_Score=189, Evalue=3e-48, Organism=Caenorhabditis elegans, GI17560914, Length=365, Percent_Identity=34.2465753424658, Blast_Score=188, Evalue=4e-48, Organism=Caenorhabditis elegans, GI71982617, Length=303, Percent_Identity=24.0924092409241, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71982625, Length=303, Percent_Identity=24.0924092409241, Blast_Score=103, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6320438, Length=379, Percent_Identity=33.7730870712401, Blast_Score=217, Evalue=3e-57, Organism=Saccharomyces cerevisiae, GI6320267, Length=368, Percent_Identity=29.8913043478261, Blast_Score=172, Evalue=9e-44, Organism=Saccharomyces cerevisiae, GI6323954, Length=261, Percent_Identity=28.735632183908, Blast_Score=108, Evalue=2e-24, Organism=Drosophila melanogaster, GI24662918, Length=398, Percent_Identity=58.7939698492462, Blast_Score=486, Evalue=1e-137, Organism=Drosophila melanogaster, GI17137420, Length=349, Percent_Identity=32.0916905444126, Blast_Score=198, Evalue=6e-51, Organism=Drosophila melanogaster, GI17136286, Length=381, Percent_Identity=33.0708661417323, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI24653280, Length=331, Percent_Identity=27.7945619335347, Blast_Score=115, Evalue=7e-26, Organism=Drosophila melanogaster, GI24653276, Length=331, Percent_Identity=27.7945619335347, Blast_Score=115, Evalue=7e-26, Organism=Drosophila melanogaster, GI24653278, Length=331, Percent_Identity=27.7945619335347, Blast_Score=115, Evalue=7e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011282 - InterPro: IPR001917 - InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.3.1.29; =2.3.1.47 [H]
Molecular weight: Translated: 42910; Mature: 42778
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: PS00599 AA_TRANSFER_CLASS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTSFYEQIKQQLADVKAEGLYKSERVIVSPQQAAIKVGGDEVINFCANNYLGLANHPE CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHEEEECHHHHHHHHHHCCCCCCCCHH LVKAAQAGLADHGFGMASVRFICGTQDIHKQLEAKLSEFLGTEDTILYSSCFDANAGLFE HHHHHHCCCCCCCCCHHHHEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH TLLGPEDAIVSDALNHASIIDGVRLCKAMRFRYANNDMADLETQLKAAREAGARHILIAT HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEE DGVFSMDGVIANLKGVCDLADQYGALVMVDDSHAVGFIGQNGRGTHEYCDVMDRVDIITG CCCEEHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHH TLGKALGGASGGYTSGKKEVIDWLRQRSRPYLFSNSLAPSIVAASIRVLDMLKDGQALRE HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHH AVWENSRYFREKMSAAGFTLAGADHAIVPVMLGDAKLAADFSARLLKEDIYVIGFSFPVV HHHCCHHHHHHHHHHCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCC PKGQARIRTQMSAAHTRAQLDKAIEAFTRIGKEMGII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ASTSFYEQIKQQLADVKAEGLYKSERVIVSPQQAAIKVGGDEVINFCANNYLGLANHPE CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHEEEECHHHHHHHHHHCCCCCCCCHH LVKAAQAGLADHGFGMASVRFICGTQDIHKQLEAKLSEFLGTEDTILYSSCFDANAGLFE HHHHHHCCCCCCCCCHHHHEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHH TLLGPEDAIVSDALNHASIIDGVRLCKAMRFRYANNDMADLETQLKAAREAGARHILIAT HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEE DGVFSMDGVIANLKGVCDLADQYGALVMVDDSHAVGFIGQNGRGTHEYCDVMDRVDIITG CCCEEHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHH TLGKALGGASGGYTSGKKEVIDWLRQRSRPYLFSNSLAPSIVAASIRVLDMLKDGQALRE HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHH AVWENSRYFREKMSAAGFTLAGADHAIVPVMLGDAKLAADFSARLLKEDIYVIGFSFPVV HHHCCHHHHHHHHHHCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEEECCCC PKGQARIRTQMSAAHTRAQLDKAIEAFTRIGKEMGII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]