| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773195
Identifier: 119773195
GI number: 119773195
Start: 54899
End: 55156
Strand: Direct
Name: 119773195
Synonym: Sama_0053
Alternate gene names: NA
Gene position: 54899-55156 (Clockwise)
Preceding gene: 119773194
Following gene: 119773197
Centisome position: 1.27
GC content: 52.33
Gene sequence:
>258_bases ATGAACCAAAGCGTTATCTTTGCCGATGCGATTTCCATCGATGGCAAGAAGCAGCAGCTGATGCTGGTGGCCCATCAGCA GGGGATGCGTATCGAATGCATACTGCCGTTTGAACGTCTCGCCGCATTAAGCGGTGAAGAGGTGACCGTGACCAACGCTG CTGCTTTACTCGAAAGTGTGCGTTTTGAGGTGGAAGAGATGGCCGAGTCACTCATCGAAGAAGATGCCTTCGATGAGTGG GGGCGGATAGAGCTTTAA
Upstream 100 bases:
>100_bases GCCAGGCTGCAGAAAGCTTTTATTTGTGGCGCAGGGTAAGACCCAATGCAGCGCCCGTGCTGCAAACCCTGCGGCAGAGT CTTATTTCAGGAGTGTGACT
Downstream 100 bases:
>100_bases GCGGAAGCCTGCTCCTGCAGATACTCCTCTTTCAGCAACACATAGTTTTGGGCTGACTGAGGCAGAAATTTAAGTTCAGC TTCGGTCAGCGGCCTGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 85; Mature: 85
Protein sequence:
>85_residues MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESVRFEVEEMAESLIEEDAFDEW GRIEL
Sequences:
>Translated_85_residues MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESVRFEVEEMAESLIEEDAFDEW GRIEL >Mature_85_residues MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESVRFEVEEMAESLIEEDAFDEW GRIEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9526; Mature: 9526
Theoretical pI: Translated: 3.93; Mature: 3.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESV CCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECHHHHHHCCCCEEEEHHHHHHHHHH RFEVEEMAESLIEEDAFDEWGRIEL HHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESV CCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECHHHHHHCCCCEEEEHHHHHHHHHH RFEVEEMAESLIEEDAFDEWGRIEL HHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA