Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119773195

Identifier: 119773195

GI number: 119773195

Start: 54899

End: 55156

Strand: Direct

Name: 119773195

Synonym: Sama_0053

Alternate gene names: NA

Gene position: 54899-55156 (Clockwise)

Preceding gene: 119773194

Following gene: 119773197

Centisome position: 1.27

GC content: 52.33

Gene sequence:

>258_bases
ATGAACCAAAGCGTTATCTTTGCCGATGCGATTTCCATCGATGGCAAGAAGCAGCAGCTGATGCTGGTGGCCCATCAGCA
GGGGATGCGTATCGAATGCATACTGCCGTTTGAACGTCTCGCCGCATTAAGCGGTGAAGAGGTGACCGTGACCAACGCTG
CTGCTTTACTCGAAAGTGTGCGTTTTGAGGTGGAAGAGATGGCCGAGTCACTCATCGAAGAAGATGCCTTCGATGAGTGG
GGGCGGATAGAGCTTTAA

Upstream 100 bases:

>100_bases
GCCAGGCTGCAGAAAGCTTTTATTTGTGGCGCAGGGTAAGACCCAATGCAGCGCCCGTGCTGCAAACCCTGCGGCAGAGT
CTTATTTCAGGAGTGTGACT

Downstream 100 bases:

>100_bases
GCGGAAGCCTGCTCCTGCAGATACTCCTCTTTCAGCAACACATAGTTTTGGGCTGACTGAGGCAGAAATTTAAGTTCAGC
TTCGGTCAGCGGCCTGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESVRFEVEEMAESLIEEDAFDEW
GRIEL

Sequences:

>Translated_85_residues
MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESVRFEVEEMAESLIEEDAFDEW
GRIEL
>Mature_85_residues
MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESVRFEVEEMAESLIEEDAFDEW
GRIEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9526; Mature: 9526

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESV
CCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECHHHHHHCCCCEEEEHHHHHHHHHH
RFEVEEMAESLIEEDAFDEWGRIEL
HHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNQSVIFADAISIDGKKQQLMLVAHQQGMRIECILPFERLAALSGEEVTVTNAAALLESV
CCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEECHHHHHHCCCCEEEEHHHHHHHHHH
RFEVEEMAESLIEEDAFDEWGRIEL
HHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA